Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1540 ATGGCGAAAAAAGCTTGCAAGTCGCAAGAAGAAATTGCGAACGAAGCCATCAAGCAGGCTTTGAAGGCTCTGCGGAAGCGCCATTTGCTCGAAGAAGCCGCTCATGCTCCCGCTTTTCAAGCTCTTTCTAGACCCTTCGTTTCCCAGGGCTCTGAGTGGAAAGAGAAAACAGAGAGTCTGCAATTGGAACTTCAGCATTGCTACAAAGCTCAGTCTCGGCTGTCTGAGCAGCTTGTCGTGGAAGTAGCTGAGTCCAGAGCTTTGAAAGCTTTGGTTCAAGAGAAACAAACTGCAATTGCCGATCTGCAAAAGGAGTTGACCGAAGTGAGGGATGAGTGCTCTCAATTAAAGGTGGACTTGGAGCAAAAGATTAAAGCTCTAGAATTGGTTATGAGTGAGAATTCAGAACTTAAAGCACAACTGGAGCAGATGACCACTGAAGCCAAGAAAGCTGAAGCTGAAAATAAGATGTTGATTGATCGGTGGATGCTAGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCTAATGCACTGTATGAAGACATGGTTCAGCGGCTGAAGGCCAGTGGTTTAGAACAACTAGCTAGGCAGCAGGTGGATGGCATAGTTCGCCGAAGCGAAGAAGGTGCTGAATTCTTTTCAGAGTCAAACATACCTTCCACCTGCAAATACAGGCTTAATGCACATGAAGGTGGTTGTGCTTCCATATTGTTTGAGTACAACTCTAGTAAGTTGATTACTGGGGGACAGGATCGGTCAGTTAAAGTGTGGGATACAAATACAGGATCCGTAAGTTCTAATCTTTATGGCTGCCTTGGCTCCGTATTAGATCTCACAATCACTCATGACAATCGATCTGTCATTGCTGCTAGCAGCTCAAACAACTTGTATGTTTGGGATCTCAACTCAGGCCGGGTTCGTCACACCCTTACCGGCCACGCAGATAAAGTTTGCGCTGTTGATGTCAGCAAGATTTCAAGCCGTCATGTTGTCAGCACAGCTTATGATCGCACTATCAAAGTTTGGGACTTAACTAAAGGTTACTGCACTAACACAATCATATTCCACAGCAATTGCAATGCTCTTTCCTTCAGCATGGATGGACAGACCATATTTTCTGGACATGTTGACGGTAATCTTAGGTTATGGGACATTCAGACTGGAAAATTGCTGAGCGAGGTTGCTGCACATTCACTTGCCGTCACATCATTATCCCTTTCTCGGAATGGAAATGTTGTATTGACCAGTGGAAGGGATAATTTGCATAATTTGTTTGATATGAGATCCCTGGAAGTTTGTGGCACGCTAAGGGCCACAGGAAACAGAGTAGCTTCTAATTGGAGTCGCTCCTGTATTAGCCCAGATGACAACCACGTTGCTGCTGGTTCTGCTGATGGATCTGTCTATATTTGGTCGATATCCAAAGGTGATATCGTCAATACTCTGAAGGAGCACACCACTTCTGTTCTGTGTTGTAGGTGGAGTGGAATGGGGAAACCCTTAGCTTCAGCTGACAAAAATGGGGTCGTTTGCGTCTGGACGTAG 1548 0.4541 MAKKACKSQEEIANEAIKQALKALRKRHLLEEAAHAPAFQALSRPFVSQGSEWKEKTESLQLELQHCYKAQSRLSEQLVVEVAESRALKALVQEKQTAIADLQKELTEVRDECSQLKVDLEQKIKALELVMSENSELKAQLEQMTTEAKKAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVQRLKASGLEQLARQQVDGIVRRSEEGAEFFSESNIPSTCKYRLNAHEGGCASILFEYNSSKLITGGQDRSVKVWDTNTGSVSSNLYGCLGSVLDLTITHDNRSVIAASSSNNLYVWDLNSGRVRHTLTGHADKVCAVDVSKISSRHVVSTAYDRTIKVWDLTKGYCTNTIIFHSNCNALSFSMDGQTIFSGHVDGNLRLWDIQTGKLLSEVAAHSLAVTSLSLSRNGNVVLTSGRDNLHNLFDMRSLEVCGTLRATGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSISKGDIVNTLKEHTTSVLCCRWSGMGKPLASADKNGVVCVWT* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 345 - -
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 264 - -
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Dod05g1540 515 Coils Coil 170 190 - -
Dod05g1540 515 Gene3D - 216 358 IPR015943 GO:0005515
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 483 515 IPR001680 GO:0005515
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 482 IPR001680 GO:0005515
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 483 515 - -
Dod05g1540 515 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Dod05g1540 515 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Dod05g1540 515 Pfam WD domain, G-beta repeat 452 473 IPR001680 GO:0005515
Dod05g1540 515 Pfam WD domain, G-beta repeat 307 344 IPR001680 GO:0005515
Dod05g1540 515 Pfam WD domain, G-beta repeat 479 514 IPR001680 GO:0005515
Dod05g1540 515 Coils Coil 85 161 - -
Dod05g1540 515 Gene3D - 359 515 IPR015943 GO:0005515
Dod05g1540 515 ProSitePatterns Trp-Asp (WD) repeats signature. 246 260 IPR019775 -
Dod05g1540 515 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 9 515 - -
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Dod05g1540 515 Gene3D - 90 163 - -
Dod05g1540 515 Pfam Autophagy protein 16 (ATG16) 48 174 IPR013923 -
Dod05g1540 515 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
Dod05g1540 515 PANTHER AUTOPHAGY PROTEIN 16-LIKE 9 515 IPR045160 GO:0000045
Dod05g1540 515 SUPERFAMILY WD40 repeat-like 219 514 IPR036322 GO:0005515
Dod05g1540 515 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Dod05g1540 515 SMART WD40_4 262 301 IPR001680 GO:0005515
Dod05g1540 515 SMART WD40_4 304 344 IPR001680 GO:0005515
Dod05g1540 515 SMART WD40_4 347 385 IPR001680 GO:0005515
Dod05g1540 515 SMART WD40_4 220 259 IPR001680 GO:0005515
Dod05g1540 515 SMART WD40_4 388 427 IPR001680 GO:0005515
Dod05g1540 515 SMART WD40_4 476 515 IPR001680 GO:0005515
Dod05g1540 515 SMART WD40_4 430 473 IPR001680 GO:0005515
Dod05g1540 515 Coils Coil 7 27 - -
Dod05g1540 515 CDD WD40 223 514 - -
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 430 IPR001680 GO:0005515
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 353 IPR001680 GO:0005515
Dod05g1540 515 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 394 IPR001680 GO:0005515
Dod05g1540 515 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Dod05g1540 515 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Dod05g1540 515 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1540 Dod-Chr5 40337745 40341072 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1540 370 514 Miscellaneous Gene Families AT5G08390 27.586 9.83e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1540 K17890 - gmx:100778336 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1540 05 40337745 40341072 Dod05g1540 05 40337745 40341072 ECH