Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1539 ATGAAGAAGCTCTTGTGGGTTGCTGTATTATCCCTTGCTTTGGTTCTCGGAGTTGCCGAGAGCTTCGATTTCCACGAGAAGGAACTGGAATCCGAGGATGCTTTATGGGACTTGTACGAGCGGTGGAGGAGCCGCCACACGGTTTCTAGAAGCATCGAAGATAAGCACAAGCGCTTCAACGTGTTCAAGGCCAATGTGATGCATGTCCACAACACCAACAAGTTGGACAAGCCTTACAAGCTGAAGCTGAACAAGTTCGCTGACATGACCAACCATGAGTTCAGAAGTATCTATGCTGGCTCCAAGGTTGGTCACCACAGAATGTTCCGTGGGACCCCACGTGGGAATGGAACCTTCATGTATGAGAATGTTGAAAGAGTTCCTGCTTCTGTGGATTGGAGGAAGAAAGGCGCTGTAACTGGTGTGAAGGATCAAGGCCAATGTGGTAGTTGCTGGGCATTTTCAACTATAGCAGCCGTTGAAGGTATTAACCAAATCAAGACACATAAGCTAGTCTCCTTGTCTGAGCAAGAACTTGTAGATTGTGACAGACAACAAAATCAAGGATGCAACGGTGGGCTTATGGATTATGCGTTCGAGTTCATCAAGCAAAAGGGTGGCATAACAACAGAAAGTGGTTACCCTTACACTGCACAAGATGGAACCTGTGATAAATCAAAGGAGAAGCCAGCAGTGTCAATTGATGGACATGAGAGTGTACCCTTGAACAATGAGGCCGCTTTGCTCAAAGCTGTTGCCAACCAACCTGTATCTGTGGCCATTGAGGCTGCGGGATCTGACTTCCAATTCTACTCGGAGGGAGTGTTTACCGGCGGGTGTGGGACTGACCTGGATCATGGTGTTGCAATTGTGGGCTATGGAGCAGCCCAAGATGGAACCAAATATTGGATAGTGAAGAACTCATGGGGAGCCGAATGGGGAGAACAGGGCTACATTAGGATGCACAGGGGCATATCCCGCAAGCAGGGTCTATGTGGCATAGCAATGGAGGCTTCCTACCCAATCAAAAAGTCCTCTACTAACCCAACAAAACATTCATCATCATCTCTTAAAGACGAGCTTTAA 1086 0.477 MKKLLWVAVLSLALVLGVAESFDFHEKELESEDALWDLYERWRSRHTVSRSIEDKHKRFNVFKANVMHVHNTNKLDKPYKLKLNKFADMTNHEFRSIYAGSKVGHHRMFRGTPRGNGTFMYENVERVPASVDWRKKGAVTGVKDQGQCGSCWAFSTIAAVEGINQIKTHKLVSLSEQELVDCDRQQNQGCNGGLMDYAFEFIKQKGGITTESGYPYTAQDGTCDKSKEKPAVSIDGHESVPLNNEAALLKAVANQPVSVAIEAAGSDFQFYSEGVFTGGCGTDLDHGVAIVGYGAAQDGTKYWIVKNSWGAEWGEQGYIRMHRGISRKQGLCGIAMEASYPIKKSSTNPTKHSSSSLKDEL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1539 361 SMART pept_c1 127 342 IPR000668 GO:0006508|GO:0008234
Dod05g1539 361 PRINTS Papain cysteine protease (C1) family signature 302 308 IPR000668 GO:0006508|GO:0008234
Dod05g1539 361 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Dod05g1539 361 PRINTS Papain cysteine protease (C1) family signature 145 160 IPR000668 GO:0006508|GO:0008234
Dod05g1539 361 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 19 349 - -
Dod05g1539 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 19 349 - -
Dod05g1539 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Dod05g1539 361 SUPERFAMILY Cysteine proteinases 33 342 IPR038765 -
Dod05g1539 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Dod05g1539 361 SMART Inhibitor_I29_2 39 94 IPR013201 -
Dod05g1539 361 CDD Peptidase_C1A 128 341 IPR039417 -
Dod05g1539 361 Pfam Papain family cysteine protease 127 342 IPR000668 GO:0006508|GO:0008234
Dod05g1539 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 302 321 IPR025661 -
Dod05g1539 361 Gene3D Cysteine proteinases 13 344 - -
Dod05g1539 361 Pfam Cathepsin propeptide inhibitor domain (I29) 39 94 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1539 Dod-Chr5 40330713 40334998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1539 K16292 - zju:107418255 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1539 05 40330713 40334998 Dod05g1539 05 40330713 40334998 ECH
Dod05g1539 05 40330713 40334998 Dod09g0200 09 2767404 2769268 PCT