Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1504 ATGGGGTGCGCATCAGAATTCGAGCATGTTCTTGGATACTTCGATGAAGATGGGGACGGCAAGATTTCGGCGTCCGAGCTCAGGAACCGGCTGGGCATGATGGGTGGGAAGGTTTTGCTTGAGGAAGCAGAGATGGCTATTGCGGCATTGGATTCGGACGGTGATGGGCTGCTGAGTTTGGAGGATTTGGTGAAGCTGATGGAAGGAGGGGGTGATGAAGAGAAGTTGAAGGATTTAAGGGAAGCTTTTGAGATGTATGACACGGACAAGTGTGGGTTCATAACCCCAGAGGGCTTGAGGAGCATGTTGAACAGGTTGGGAGAATCAAAGTCCATTGAGGAATGCAAAGTTATGATAAGCTGCTTTGATCTGAATGGGGATGGCATGCTTGGCTTTGAAGAATTCAAAATTATGATGCAGTGA 423 0.4846 MGCASEFEHVLGYFDEDGDGKISASELRNRLGMMGGKVLLEEAEMAIAALDSDGDGLLSLEDLVKLMEGGGDEEKLKDLREAFEMYDTDKCGFITPEGLRSMLNRLGESKSIEECKVMISCFDLNGDGMLGFEEFKIMMQ* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1504 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Dod05g1504 140 CDD EFh 6 67 IPR002048 GO:0005509
Dod05g1504 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Dod05g1504 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Dod05g1504 140 Pfam EF-hand domain pair 14 68 IPR002048 GO:0005509
Dod05g1504 140 Gene3D - 70 140 - -
Dod05g1504 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Dod05g1504 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Dod05g1504 140 Gene3D - 2 68 - -
Dod05g1504 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 5 140 - -
Dod05g1504 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Dod05g1504 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Dod05g1504 140 CDD EFh 78 140 IPR002048 GO:0005509
Dod05g1504 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 5 140 - -
Dod05g1504 140 SUPERFAMILY EF-hand 6 139 IPR011992 -
Dod05g1504 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Dod05g1504 140 SMART efh_1 114 140 IPR002048 GO:0005509
Dod05g1504 140 SMART efh_1 6 34 IPR002048 GO:0005509
Dod05g1504 140 SMART efh_1 42 70 IPR002048 GO:0005509
Dod05g1504 140 SMART efh_1 78 106 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1504 Dod-Chr5 39962477 39963663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1504 4 140 EF-hand Containing Proteins AT5G42380 46.043 1.28e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1504 K13448 - gmx:100816563 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1504 05 39962477 39963663 Dod05g1504 05 39962477 39963663 ECH