Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1313 ATGGATGTCGTTGCCACCGCAGCTACCACGGCCTTCGCACTCAACAAGCCTATGCTCGCTTTCCCATCTTCTTCGAGAATCGCAACCCCTATTCGAGCCCTAAACTGCTCCTCCGCTGTCAGAGCGTCCCTCTCCACCGACTTCGTCGCCCCTCTCGCCGCCTTCGGCAGCAGCGCCTCCAGCCCTTTCGCCGGCCACAAGCTCCGCCCTTCCTCCCTCAATCCGGCGTCGTTTCGTGGCTCCAAGGGTAAACGAGGCGTCGTTACTATGGTTATTCCTTTTTCAAGAGGAAGTGCGTGGGAGCAACCTCCACCAGACTTAGCTTCTTACTTGTACAAAAATCGAATTGTTTATTTGGGCATGTCTCTTGTTCCGTCTGTCACAGAGTTGATCCTAGCTGAATTTCTTTATCTTCAATATGAAGATGAAGAAAAGCCTATTTACCTATACATAAACTCCACTGGGACAACTAAGGGAGGTGAGAAGTTGGGTTATGAGACCGAAGCATTTGCAATTTATGATGTGATGAGGTATGTCAAGCCTCCTATATTTACTCTGTGTGTTGGTAATGCTTGGGGAGAAGCAGCTTTACTTTTGGCTGCTGGTGCAAAAGGAAACCGTTCTGCTTTGCCATCATCAACAATAATGATAAGACAGCCAATAGCAAGGTTTCAAGGTCAAGCAACAGATGTTAATCTTGCAAGAAAAGAAGTCAATAATGTGAAGACAGAATTGGTTAAATTATACGCAAAGCATATGGAAAAATCACCTGAGCAGATCGAAGCTGATATACAGCGCCCAAAGTATTTTAGTCCAAGTGAAGCTGTTGAATATGGAATCATAGATAAGGTATTATACAATGATCGGAGCACTCAGGATCATGGAGTTGTTTCTGATCTTAAAAAGGCACAACTCATTTAA 921 0.4539 MDVVATAATTAFALNKPMLAFPSSSRIATPIRALNCSSAVRASLSTDFVAPLAAFGSSASSPFAGHKLRPSSLNPASFRGSKGKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARKEVNNVKTELVKLYAKHMEKSPEQIEADIQRPKYFSPSEAVEYGIIDKVLYNDRSTQDHGVVSDLKKAQLI* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1313 306 SUPERFAMILY ClpP/crotonase 101 288 IPR029045 -
Dod05g1313 306 Gene3D - 79 293 - -
Dod05g1313 306 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 15 305 - -
Dod05g1313 306 PRINTS Clp protease catalytic subunit P signature 206 225 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod05g1313 306 PRINTS Clp protease catalytic subunit P signature 146 166 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod05g1313 306 PRINTS Clp protease catalytic subunit P signature 185 202 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod05g1313 306 PRINTS Clp protease catalytic subunit P signature 263 282 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod05g1313 306 PRINTS Clp protease catalytic subunit P signature 106 121 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod05g1313 306 Coils Coil 231 251 - -
Dod05g1313 306 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 15 305 IPR023562 -
Dod05g1313 306 CDD S14_ClpP_2 106 284 IPR001907 GO:0004176|GO:0004252|GO:0006508
Dod05g1313 306 Pfam Clp protease 106 286 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1313 Dod-Chr5 36836681 36843852 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1313 K01358 - gmx:100780029 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1313 05 36836681 36843852 Dod05g1313 05 36836681 36843852 ECH