Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1288 ATGGCTGTTCAAGCTCAGTACCCTTCCAATGTCCTCCTTCTAAACAGCAGAAACGTGCAAGAAGGACATGATTACTCGTTACAACCACAATCAGGAGGATTAGTCCTTGATCAACCCCATAATACTTTATACAACAATGGAAGTGTCAATTCCCGCAAGAGAGCAAGAGAAGCCACAGTGACAACAACAACAACAACAGGGTTCCCACACAACAATGTCATGAATCCATTAATGTTCAACTTTGAATCTCAACCTCCACAGCTCGTAGAACTCTCTCAGCTTCACAATCACCAACAACAAAATGTTGTCTCCACAGGCCTACGCTTATCCACCTTCGGTGAACAACGACAACAAAGAACACACCTTCAACAAAACCAACAACCTCAACAACAACAACTACATGGGTGTCACAACTCTTCGTTATTGTCTCTGTTGTCTCAAGGCTTTGCTTCCCAAATCAAACAACAACGAGACGAAATTGACCAATTCCTTCAAGCACAGGGTGAGCAATTGCGGCGGGCATTGGCGGAGAAGAGGCAGAGGCATTACCGTGAGCTGCTGAGCGCGGCGGAGGAGGCGGTGGCGCGTCGGCTGAGGGAGAAGGAGGCGGAGGTTGAGAAGGCTACACGCCGGAACGCCGAATTAGAGGCACGAGCCGCCCAGCTCGCCGCCGAGGCGCAGGTGTGGCAGGCCAAGGCGAGGGCGCAGGAGGCGGCGGCGGCTTCACTTCAGGCACAGCTGCAGAAGACCATGATGGCCTCCGCCGCAGGCGCCGGGTGCCACGGCGGCGAAGATGGCGGTGCCGGAATGTCGTGCGCCGTGGAGGGACAAGCTGAGGACTCGGAGTCGGCGTACGTGGACCCGGACAGGGTGGTAGTGGTTTCGGCGGCGGCGGGTGCAGCGGCGCGTCCGAAATGCAGGGGGTGCGGGAGGCGCGTGGCGTCGGTGGTGGTGCTGCCGTGTCGGCACTTGTGCATCTGTACGGAATGCGACGTGCATTTCCGCGCGTGCCCTGTTTGCCTCACTCTCAAGAATTCAACCGTCGAGGTCTTTCTCTCTTGA 1062 0.5574 MAVQAQYPSNVLLLNSRNVQEGHDYSLQPQSGGLVLDQPHNTLYNNGSVNSRKRAREATVTTTTTTGFPHNNVMNPLMFNFESQPPQLVELSQLHNHQQQNVVSTGLRLSTFGEQRQQRTHLQQNQQPQQQQLHGCHNSSLLSLLSQGFASQIKQQRDEIDQFLQAQGEQLRRALAEKRQRHYRELLSAAEEAVARRLREKEAEVEKATRRNAELEARAAQLAAEAQVWQAKARAQEAAAASLQAQLQKTMMASAAGAGCHGGEDGGAGMSCAVEGQAEDSESAYVDPDRVVVVSAAAGAAARPKCRGCGRRVASVVVLPCRHLCICTECDVHFRACPVCLTLKNSTVEVFLS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1288 353 ProSiteProfiles Zinc finger RING-type profile. 306 340 IPR001841 -
Dod05g1288 353 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 352 IPR017066 -
Dod05g1288 353 PIRSF SBP1_RNase_bind 1 353 IPR017066 -
Dod05g1288 353 Pfam Zinc finger, C3HC4 type (RING finger) 305 341 - -
Dod05g1288 353 Coils Coil 191 232 - -
Dod05g1288 353 MobiDBLite consensus disorder prediction 45 71 - -
Dod05g1288 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 353 IPR013083 -
Dod05g1288 353 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1288 Dod-Chr5 36397004 36399284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1288 295 342 Miscellaneous Gene Families AT4G39050 37.500 1.86e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1288 K19042 - gmx:100788924 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1288 05 36397004 36399284 Dod05g1288 05 36397004 36399284 ECH
Dod02g0903 02 11623300 11626084 Dod05g1288 05 36397004 36399284 PCT