Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod05g0689 | ATGAACGTGGGCGACCTCAACAAGATTTGGGAAATCAGAGCTCTGAAGAGGAAGCCAGGGGAAGAAGAAGCCACAACAATGTTGGAGAAGATCGCCAAACAGGTCCAGCCCATCATGCGTAAGCACAAATGGAGGGTCAAGCTTCTCTCCGAATTTTGCCCGAGCAATCCGTCTCTTCTGGGGTTGAATGTTGGAGCTGGCATACATGTGAAGTTGCGGCTACGGAGATCTAACAGGGATTGGGACTTTTACCCGTTTGATCAAGTTCTGGATACAATGCTTCATGAGCTCTGCCATAATGCCCATGGTTCTCATAATGCCAACTTCTACAAGCTTTGGGATGAACTTAGAAAGGAATGTGAAGAGCTCATGGCTAAAGGAATAACTGGCACAGGAGGGGGGTTTGACCTCCCAGGAAGGCGTTTAGGTGGTTATTCCCGCCAACCTCCACTATCATCTCTCCGTAAAACTGCATTGGCGGCTGCAGAAAAGAGATCACGACTGGGATCTCTGTCTGGACCTAAACGTCTTGGTGGCGATAGTATTATAATGGAGGCACTTACCCCAGTACAAGCTGCTGCAATGGCTGCAGAAAGGAGATTACAAGATGATATATGGTGTGGTTCTCAATCTTGTGAACATTCAGATCATGAAGATGTTAACGATGAACCTGCTGAGAATCTTATATGCAATAGTAAAAATGTGGGAAGCTCAAGACTACGAGAAAATTCAACTCTACCTTTGGATCAGATATCTCGAAAAAAAAGCCGTGTAATGGATTCAAGTTCATTGGCTCAGCCATCAAGTACCGCTGAATTTGTTGATTTGACAATGGATAGTCCGCAAATTGGATCTGTCAACAAACATCAGACTGTGACTAAAGGAAGAAGTATTGGATTAGAAAGCACTTCACGTTCTCAATCCAATTTTCAGGCAGGATCTAGTCCTGAACATTTACCAAGTCCATCCGAGCCACTATCTGGTCATAATAGAGCACATCATTCGGAAGAACCTGCAATGTGGGAGTGTCCTATGTGCACCCTGTTAAATAAAACATTAGCTCCCATATGTGAGTTGTGTGGCACAGAACAGCCAAAAGATGTTGCAACCAAGTACAGCAGTTGGTCTTGTAAATTCTGTACTTTGGAAAACAGTGTGAAGTTGGAGAAATGCTCAGCCTGTGATCAGTGGAGATACTCTCTAGGCCCACCAGTGTCAACACGGGCACCTTACCTTGGCACTTGA | 1245 | 0.4498 | MNVGDLNKIWEIRALKRKPGEEEATTMLEKIAKQVQPIMRKHKWRVKLLSEFCPSNPSLLGLNVGAGIHVKLRLRRSNRDWDFYPFDQVLDTMLHELCHNAHGSHNANFYKLWDELRKECEELMAKGITGTGGGFDLPGRRLGGYSRQPPLSSLRKTALAAAEKRSRLGSLSGPKRLGGDSIIMEALTPVQAAAMAAERRLQDDIWCGSQSCEHSDHEDVNDEPAENLICNSKNVGSSRLRENSTLPLDQISRKKSRVMDSSSLAQPSSTAEFVDLTMDSPQIGSVNKHQTVTKGRSIGLESTSRSQSNFQAGSSPEHLPSPSEPLSGHNRAHHSEEPAMWECPMCTLLNKTLAPICELCGTEQPKDVATKYSSWSCKFCTLENSVKLEKCSACDQWRYSLGPPVSTRAPYLGT* | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod05g0689 | 414 | MobiDBLite | consensus disorder prediction | 299 | 321 | - | - | |
| Dod05g0689 | 414 | ProSitePatterns | Zinc finger RanBP2-type signature. | 375 | 394 | IPR001876 | - | |
| Dod05g0689 | 414 | SUPERFAMILY | Ran binding protein zinc finger-like | 336 | 364 | IPR036443 | - | |
| Dod05g0689 | 414 | ProSitePatterns | Zinc finger RanBP2-type signature. | 341 | 360 | IPR001876 | - | |
| Dod05g0689 | 414 | Pfam | Zn-finger in Ran binding protein and others | 340 | 365 | IPR001876 | - | |
| Dod05g0689 | 414 | Pfam | WLM domain | 8 | 202 | IPR013536 | - | |
| Dod05g0689 | 414 | CDD | M48_yhfN_like | 93 | 119 | - | - | |
| Dod05g0689 | 414 | PANTHER | DNA-DEPENDENT METALLOPROTEASE WSS1 | 1 | 414 | - | - | |
| Dod05g0689 | 414 | MobiDBLite | consensus disorder prediction | 299 | 333 | - | - | |
| Dod05g0689 | 414 | PANTHER | ZINC ION BINDING PROTEIN | 1 | 414 | - | - | |
| Dod05g0689 | 414 | ProSiteProfiles | WLM domain profile. | 1 | 202 | IPR013536 | - | |
| Dod05g0689 | 414 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 337 | 366 | IPR001876 | - | |
| Dod05g0689 | 414 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 371 | 400 | IPR001876 | - | |
| Dod05g0689 | 414 | Gene3D | - | 334 | 374 | - | - | |
| Dod05g0689 | 414 | SMART | zf_4 | 373 | 397 | IPR001876 | - | |
| Dod05g0689 | 414 | SMART | zf_4 | 339 | 363 | IPR001876 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod05g0689 | Dod-Chr5 | 10329332 | 10333670 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod05g0689 | K22685 | - | gmx:100795976 | 629.402 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod05g0689 | 05 | 10329332 | 10333670 | Dod05g0689 | 05 | 10329332 | 10333670 | ECH |