Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0682 ATGGAGGAAGGTGAGGGAGGGTACGGCGAGAGCGGGGATCCGACGGATCAGTTCCACCGTAACGAAGCTATATCCGCCGTCGCCGACGAGGGTTTCTTGGGCGAGGAAGACGACGACTACGAGGACCTTTACAACGACGTCAATGTCGGCGAAGGATTCCTCCAATCACTGCGCAAAAACGACGATCTGGGCTTCCGAAACGACGACGCCGTTCAGGACAACAAGAAGCCCCACCAAGATGCACCTGCGGTTTCGATACCCGGCGTCGGCGGCGGCGGCGGTGCTAGTGAGGGTCCTGGTGGTGGGGCTGTGGATGGGGGTTCTAGGGTTTCAGGGTTTCAGAATCAGGGGTTTAGAGGGAACGATTTGGGTGCGAAAGGGGGCGGTGGATCTGGCATTAGGGTTGAGTTGGGACAGCCATCTGGGAAAATGAGTGAGATCGAGGAGCAGAGCGGCAATGGTGGTGCTGCGGTGCAGGGGATTGGGCGGCAGCAGCAGCAGCCTCATGGTGGGGTTGTTGGCTCTGTGGGGAATGAGGGTTTGGTGAGGCAAGGTGGTGCTATTGGTGGAGTTGGAGCTGGAGATGTTAATAGAGTTGGTGGGAATGGTGTTGGGAACAGTGTGACTGCTGTTACAAATGTTAACGCTGTGGGAGCTGGTGCTGGAGCTGGAGCTGGGGCTGCCGTTGGTGGTGGCGGCAGTGGTGGTGGTGCCCCTGGTGGGGGTACCATATTGTTTGTCGGTGATTTGCATTGGTGGACTACCGATGCTGAGCTGGAGGCTGAGCTTTGCAAGTATGGGCCTGTGAAGGAGGTGAAGTTTTTCGATGAGAAAGCGAGTGGGAAGTCCAAAGGGTATTGCCAGGTTGAGTTTTTTGATCCTTCTGCTGCCACTGGCTGTAAGGAAGGGATGAATGGGCACTTGTTTAATGGCAGGCCGTGTGTTGTTGCTTATGCGTCACCTTTTACTGTTAAGAAAATGGGGGAGGCTCAGATGAATAGGAATCAGCAGATAACCCAATCCGCGGCTCCCCAGGGAAGGAGGGGGCCTGCTGATGCTGGGGCTAAGCCTGGTGGGAGTAATATTGCCACGGGCGGTAACTACCAAGGTGGGGATGGCAATAGAGGCTATGGGAGAGGTAATTGGGGAAGAGGGAATAATCCTGGGATGGGTAATAGAGGGCCTGTTAATCCTATGAGGAATAGGGGTGGCGGGATGGGTGGTAGAGGTATAATGGGAAATGGTGGGAATGGATTTGGACAGGGTATGGGTGCTACTCCACCTATGATGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGCGGCTATGGAGGCTTTCCTGGTGCTCCAACGCCTCCGTTCTCTGGCATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCTGCCTTTTTCGGAAGAGGGATGCCTGTTAATGGTATGGGGATGATGCCCGGATCCGGTATGGATGGGCCTAATATGGGAATGTGGTCAGATCCGAATATGGGTGGATGGGGTGCTGAAGACCATGGTGGTGGCAGGGCTGGAGAGTCGAGTTATGGGGAGGAAGCTGCATCTGATCATCAGTATGGTGAGGCAAGTCATGATAGAACAGGTTGGCCTAATGCTATGAGGGAGAAAGATAGAGGATCGGAAAGGGATTGGTCTGGTTCTTCTGAGCGAAGGTATAGGGATGATAGGGATCAAGGATACGAGAGAGATGCACCTAGGGAAAAAGATGTGGGCCATGACAATGAATGGTCTGAAAAAAGGCATCGTGATGATAGAGAAATGGGTCGAGAGCGGTCTCGTGACCGCGATCGGGAACGTTCTCGAGACCGTGAAAGGGATCGTGAGCGTGAAAGGTACAGGGAAGATAGGGACAGATATGCGGATCATCATAGGTACAGAGACCGGGAAGCAGACCATGAAGATGAGCGGGAAAGGGGACGATCATCCAGGCATAGCAAAGCGCGATTATCACAAGAGGAGGAACACCATTCTAGGCCAAGAGATGCTGATTATGGAAAGAGGAGGCGGCTTACATCTGAGTAA 2115 0.5357 MEEGEGGYGESGDPTDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRKNDDLGFRNDDAVQDNKKPHQDAPAVSIPGVGGGGGASEGPGGGAVDGGSRVSGFQNQGFRGNDLGAKGGGGSGIRVELGQPSGKMSEIEEQSGNGGAAVQGIGRQQQQPHGGVVGSVGNEGLVRQGGAIGGVGAGDVNRVGGNGVGNSVTAVTNVNAVGAGAGAGAGAAVGGGGSGGGAPGGGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATGCKEGMNGHLFNGRPCVVAYASPFTVKKMGEAQMNRNQQITQSAAPQGRRGPADAGAKPGGSNIATGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGMGATPPMMHPQSMMNQGFDPAFGGPMGRMGGYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPGSGMDGPNMGMWSDPNMGGWGAEDHGGGRAGESSYGEEAASDHQYGEASHDRTGWPNAMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDVGHDNEWSEKRHRDDREMGRERSRDRDRERSRDRERDRERERYREDRDRYADHHRYRDREADHEDERERGRSSRHSKARLSQEEEHHSRPRDADYGKRRRLTSE* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0682 704 MobiDBLite consensus disorder prediction 338 399 - -
Dod05g0682 704 MobiDBLite consensus disorder prediction 512 704 - -
Dod05g0682 704 Gene3D - 240 381 IPR012677 -
Dod05g0682 704 MobiDBLite consensus disorder prediction 1 38 - -
Dod05g0682 704 MobiDBLite consensus disorder prediction 61 76 - -
Dod05g0682 704 MobiDBLite consensus disorder prediction 157 172 - -
Dod05g0682 704 MobiDBLite consensus disorder prediction 548 704 - -
Dod05g0682 704 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 703 IPR034772 -
Dod05g0682 704 SMART rrm1_1 244 317 IPR000504 GO:0003723
Dod05g0682 704 MobiDBLite consensus disorder prediction 56 174 - -
Dod05g0682 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Dod05g0682 704 SUPERFAMILY RNA-binding domain, RBD 238 328 IPR035979 GO:0003676
Dod05g0682 704 CDD RRM_CFIm68_CFIm59 245 318 - -
Dod05g0682 704 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 314 IPR000504 GO:0003723
Dod05g0682 704 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0682 Dod-Chr5 10189045 10192757 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0682 K14398 - gmx:100782869 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0682 05 10189045 10192757 Dod05g0682 05 10189045 10192757 ECH