Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0613 ATGGACGAAAAAATCCCATTTAAGAATCTCCATAGCAGAGAGTACTCTGGTCACAAGAAGAAGGTGCACTCTGTGGCATGGAATTGCATTGGCACAAAACTTGCTTCTGGCTCTGTTGATCAAACTGCTCGAATCTGGCACATTGAGCCACATGGGCATGGCAAGGTAAAAGATATTGAATTGAAGGGCCACACTGATAGTGTGGATCAGCTATGTTGGGACCCCAAGCATGCTGATCTGATTGCAACTGCATCTGGTGACAAGACTGTTCGTTTGTGGGACGCTCGTAGCGGAAAATGCTCACAACAGGCAGAACTCAGTGGGGAGAATATCAACATCACCTACAAACCTGATGGGACTCATGTAGCTGTAGGTAATAGGGATGATGAATTAACAATATTGGATGTTCGGAAGTTCAAACCAATTCATAGGCGCAAGTTCAATTATGAGGTAAACGAGATTGCTTGGAACATGACTGGCGAAATGTTCTTTCTAACAACGGGAAATGGGACTGTGGAAGTACTATCTTATCCATCTCTTCTGCCTCTTGATACCCTCATGGCTCATACAGCTGGTTGTTATTGCATTGCAATTGACCCAACAGGAAAATATTTTGCGGTTGGAAGTGCTGATTCCCTTGTCAGCCTGTGGGATATCTCAGAAATGCTGTGTGTGCGTACCTTTACAAAGCTGGAATGGCCTGTCCGGACAATTAGTTTCAATCATACCGGGGACTTCATTGCTTCTGCTAGTGAAGACTTGTTCATTGATATTTCAAATGTTCAAACTGGACGAACAGTGCATCAGATTCCTTGTAGGGCTGCCATGAACAGTGTTGAGTGGAATCCTAAATACAATTTGCTGGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGAATTTTTGGCTTTGAAAGTGCCTAG 942 0.4363 MDEKIPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLLPLDTLMAHTAGCYCIAIDPTGKYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGDFIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFESA* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0613 313 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Dod05g0613 313 Pfam WD domain, G-beta repeat 183 218 IPR001680 GO:0005515
Dod05g0613 313 Pfam WD domain, G-beta repeat 60 94 IPR001680 GO:0005515
Dod05g0613 313 PANTHER THO COMPLEX SUBUNIT 3 THO3 4 311 IPR040132 GO:0006406
Dod05g0613 313 SMART WD40_4 54 94 IPR001680 GO:0005515
Dod05g0613 313 SMART WD40_4 8 47 IPR001680 GO:0005515
Dod05g0613 313 SMART WD40_4 138 176 IPR001680 GO:0005515
Dod05g0613 313 SMART WD40_4 221 260 IPR001680 GO:0005515
Dod05g0613 313 SMART WD40_4 179 218 IPR001680 GO:0005515
Dod05g0613 313 SMART WD40_4 263 301 IPR001680 GO:0005515
Dod05g0613 313 Gene3D - 5 166 IPR015943 GO:0005515
Dod05g0613 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 103 IPR001680 GO:0005515
Dod05g0613 313 Pfam Anaphase-promoting complex subunit 4 WD40 domain 233 282 IPR024977 -
Dod05g0613 313 Gene3D - 167 300 IPR015943 GO:0005515
Dod05g0613 313 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Dod05g0613 313 PRINTS G protein beta WD-40 repeat signature 81 95 IPR020472 -
Dod05g0613 313 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Dod05g0613 313 CDD WD40 11 295 - -
Dod05g0613 313 ProSitePatterns Trp-Asp (WD) repeats signature. 81 95 IPR019775 -
Dod05g0613 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Dod05g0613 313 SUPERFAMILY WD40 repeat-like 9 295 IPR036322 GO:0005515
Dod05g0613 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 99 - -
Dod05g0613 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 49 IPR001680 GO:0005515
Dod05g0613 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Dod05g0613 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0613 Dod-Chr5 9207970 9218898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g0613 151 309 Miscellaneous Gene Families AT5G08390 23.125 3.52e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0613 K12880 - gmx:100812126 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0613 05 9207970 9218898 Dod05g0613 05 9207970 9218898 ECH