Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g0288 ATGGCTTCCTCAATAACAAGCTCTTCATCAAGGTTGCTTACCATTCCAAAAGAAACACACCCCATTTCCCATTTCCCTTCAAACTTTTCAAAGTTTGCATCTTTTCCTCCTTCGTCTTCTTCTCCATCTTTCAGACCCTTCTCTCATGTCTCTTGTTCTCTCACCAGAAACCCTTCTGCTCTTAAACTGGAGGAAGAAAGCAAGCTCTCTAATGGGTCAGTGCTGTTTCAGAGACCAGATTCATTTGGAAGGTTTGGCAAGTTTGGTGGCAAATATGTCCCTGAGACTCTAATGCATGCCCTCACTGAGCTTGAGGCTGCATTCCATTCCCTTTCTGCTGATGAGGATTTTCAGAGAGAGCTGGCTGGGATTCTAAGAGACTATGTTGGTCGGGAGAGTCCTCTTTACTTTGCAGAAAGGTTGACAGAGCATTACAAGAGGCCCAATGGTGAAGGGCCTCACATTTACCTGAAGAGGGAAGATCTTAATCACACTGGGGCTCACAAGATCAATAATGCTGTTGCACAAGCTTTGCTTGCTAAGAGTTTGGGAAAAAAACGCATTATTGCTGAAACTGGAGCTGGTCAGCATGGAGTTGCAACTGCTACCGTATGCGCTCGATTTGGCTTAGAATGCATTGTTTATATGGGTGCGCAGGATATGGAAAGGCAGGCACTCAATGTTTTCAGAATGCGTCTTCTTGGTGCTGAGGTGAGACCAGTGCATTCTGGGACTGCTACTCTTAAGGATGCTACATCTGAGGCTATAAGGGACTGGGTGACTAATGTTGAAACAACTCATTATATTTTGGGTTCAGTTGCTGGACCGCATCCATATCCAATGATGGTAAGAGAGTTCCATGCTGTGATTGGCAAGGAAACCAGAAAGCAAGCCTTGGAAAAATGGGGAGGGAAACCAGATGTTCTGATTGCATGTGTCGGAGGAGGTTCAAATGCCATTGGACTTTTCCATGAATTCGTTGATGACAAAGATGTTAGGCTGATTGGTGTGGAGGCTGCTGGATTTGGACTGGACAGTGGCAAGCATGCTGCAACATTAACAAAGGGTGAAGTCGGGGTTCTGCATGGAGCTATGAGTTATCTGCTGCAGGATGATGATGGACAAATTGTTGAGCCTCACTCGATTAGTGCAGGCTTGGACTACCCTGGTGTAGGACCTGAACATAGCTTTTTGAAAGAACTGGGGCGTGCTGAATATCATAGCATCACTGATGAGGAAGCACTTGAAGCTTTCAAGAGAGTTTCGCGTCTTGAAGGCATTATTCCGGCTTTGGAGACATCCCATGCTTTGGCCTATCTGGAGAAAGTGTGTCCAACCCTTCCTAATGGAACTAAAGTTGTGGTTAACTTCAGTGGGAGAGGTGACAAGGATGTTCAAACTGCTATCAAGTACTTGAAGGTTTGA 1425 0.4547 MASSITSSSSRLLTIPKETHPISHFPSNFSKFASFPPSSSSPSFRPFSHVSCSLTRNPSALKLEEESKLSNGSVLFQRPDSFGRFGKFGGKYVPETLMHALTELEAAFHSLSADEDFQRELAGILRDYVGRESPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAVAQALLAKSLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLIACVGGGSNAIGLFHEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEPHSISAGLDYPGVGPEHSFLKELGRAEYHSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKVCPTLPNGTKVVVNFSGRGDKDVQTAIKYLKV* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g0288 474 TIGRFAM trpB: tryptophan synthase, beta subunit 83 471 IPR006654 GO:0004834|GO:0006568
Dod05g0288 474 Gene3D - 130 465 IPR036052 -
Dod05g0288 474 CDD Trp-synth_B 100 467 IPR006654 GO:0004834|GO:0006568
Dod05g0288 474 Hamap Tryptophan synthase beta chain [trpB]. 78 472 IPR023026 GO:0000162|GO:0004834
Dod05g0288 474 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 162 176 IPR006653 GO:0004834|GO:0006568
Dod05g0288 474 PIRSF Trp_syn_beta 69 474 IPR023026 GO:0000162|GO:0004834
Dod05g0288 474 Pfam Pyridoxal-phosphate dependent enzyme 130 459 IPR001926 -
Dod05g0288 474 Gene3D - 85 287 IPR036052 -
Dod05g0288 474 PANTHER TRYPTOPHAN SYNTHASE-RELATED 14 474 - -
Dod05g0288 474 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 14 474 - -
Dod05g0288 474 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 79 472 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g0288 Dod-Chr5 3612084 3617096 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g0288 K01696 - gmx:100792812 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g0288 05 3612084 3617096 Dod05g0288 05 3612084 3617096 ECH