Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g3088 ATGGAAGAGCCTTCCAAGGCTTCTTCCTCCTCCTCTCTTAGCCTTACAGTTGAGCAAGCACAACCACAGCCTCCTCCCGAGGCTGTGTTCTTGGTCTTAGCTTACCTTCCAGTGTATGAGCTTCTAGTCATGTCTCAAGTTTGCATGTCACTACGGGATGCAGTGAACAAGGATGTGTTGCCATGGCTGAATATTGTCGTTGAAAGGCCTCTGAATTCTCGGCTCTCTGATGATATTCTGATCAAGATCACCTCCAAGGCCAACGGCAGGCTCAAAACTCTGGCTCTCATGAACTGCATGCATATTACAAACGAGGGGCTTCAAAGGGTAGTTGAACAAAACCCTCTCATAAGCGAGCTCCACATACCAGCATGCACTAGTATAACCCCTGAAGGAGTTCTAAGAGCGGTGAAAACGCTGTGCCAAGGAAGCAGTTGCTTGAGAACATTAAGGATAAACGGCATCTACGACCTACAGAAGGAGCATCTTGACATGCTTGCCTTTTACCTTAGAAAGAACCTGCAATTAGAGGAGCAGCAAGAGCCACACCAGCCTGTCTACTATCATGAACGTGGTAACCTGTCGGTATTAAAGCGCAAAGAAAGCCAGCTGATTATCGACTTGGACATATGTCCTAATTGCCTTGAGGTAAGGATGGTATATGACTGCCCAAAAGGGTACTGCAAGAGGAGGGAATGGCCCCTTGACCAATGTAGAGCATGCAAGTTTTGTATTCCAAGGTGTGAAAACTGTGGTGGATGCATTGCATCCGAAGAAATGGAAGAGGGTGCTTGTTCAGATATCTTGTGCCTTAAATGTTGGTTACAAGAGCACCCCAAATGCAGTTTCTGTAACAAACCATACTGTAAGCAACACACAAGTTGGCTGTGCACTTCTTCAGACTCTAGATTCGTTTGTAGAGTTTGTGAAGAAAATTCCCATGGATATACGTACATGGATGCTGTATGA 969 0.4582 MEEPSKASSSSSLSLTVEQAQPQPPPEAVFLVLAYLPVYELLVMSQVCMSLRDAVNKDVLPWLNIVVERPLNSRLSDDILIKITSKANGRLKTLALMNCMHITNEGLQRVVEQNPLISELHIPACTSITPEGVLRAVKTLCQGSSCLRTLRINGIYDLQKEHLDMLAFYLRKNLQLEEQQEPHQPVYYHERGNLSVLKRKESQLIIDLDICPNCLEVRMVYDCPKGYCKRREWPLDQCRACKFCIPRCENCGGCIASEEMEEGACSDILCLKCWLQEHPKCSFCNKPYCKQHTSWLCTSSDSRFVCRVCEENSHGYTYMDAV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g3088 322 Pfam F-box domain 25 60 IPR001810 GO:0005515
Dod04g3088 322 PANTHER F-BOX PROTEIN SKIP28 12 315 - -
Dod04g3088 322 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 12 315 - -
Dod04g3088 322 SMART fbox_2 24 65 IPR001810 GO:0005515
Dod04g3088 322 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 238 249 IPR017900 -
Dod04g3088 322 Gene3D Ribonuclease Inhibitor 44 177 IPR032675 -
Dod04g3088 322 SUPERFAMILY RNI-like 78 177 - -
Dod04g3088 322 SUPERFAMILY F-box domain 25 71 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g3088 Dod-Chr4 54584783 54587288 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g3088 - - vra:106769044 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g3088 04 54584783 54587288 Dod04g3088 04 54584783 54587288 ECH