LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g2860	ATGCTTTGCTATGCTATGCATTCATCACTCATTCACTCGCAGCACACTCTTCTCAATCACACACACTCTTGTCGATCACTCACTCATCCATCCATCCTCTTCCTCCATTCTATTCAAACCCTAACTCATAACCTTCACTTCCCAACCAATAATAATAATAATAATAATATGATCGTCGCATCCCAGTCAACCGCAACCTTCTCACCTTCCTTCCCCTCCTCAACTCGCTCCGATTCAACTCGCCCAACTCGCTTCCCTCTCCTTACGAACGCAACCCGCCGTCCACCTAGCCGCCGGCTCGCCATCTCCTCCCGATTCAACTCCTCCGAGTCCTCCGGCCCCGGCGGCTCCGTCTCGCCGGGGAACGGCGATGCGCCCTACGAGCTCCACCACGATTTCTCGCCTCAGCGCGACAGGAACCGCTCGCCGGTGTTCGTGACGCTCCCCGTGAACTCCGTGGGTCCCGAGGGGAAGCTCTGGAGGCCGAAGGCCATGATGTTCTCGCTGAAGGCGCTTGCCGCTGCCGGCGTGGAAGGCGTGGTGGTGGAGATGTGGTGGGGACTCGTTGAGAGGAACGAGCCTAGGGTTTACGATTGGCGTGGCTATCGTGAGCTCGTCATGATGGCTTCCATGTGTGGCCTTAAGGTTCGAGCTGTTCTTGCGTTCCATCAGTACGGCACAGGGCCCGATGATCCTAATTGGATACCACTTCCTCTGTGGGTGCTTGATGAGTTACATAAAGATCCAGAGTTAGCATATTCCGACCGGTTCGGGAGAAGAAGTGTTGAATACATTTCCCTTGGATGTGATATCCTTCCTGTGCTCCGTGGACGCTCTCCTATTCAAGCATATGCGGATTTTATGAGAGACTTCAGGGACACTTTCAGGCCTTCACTTGGTGTTATCATCACAGGTGTACAGATAGGCATGGGTCCTGGTGGTGAACTAAGATATCCGTCATTCTCTCCGCAGAAGCCAAATCCGGCTCAGCCTCATGAACTTGGCGAGTTTCAGTGTTATGATAAGTTTATGCTTGCTTCTCTAAATGCGTGTGCAAGAAAGATTGGAAAGCGCGAATGGGGAAATGGTGGTCCATTCGGTACTGGAAGTTTGATGCAAAATCCTGAGCATACCGAATTTTTTAGAAATGAAGGTGGCTCTTGGAACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAGATATGCTGCTACTGCATGGAGAGAGAATTTGTAGGGAAGCTGAAACTATATTTAGGGGTGCAGAAGTCCATATACTGGCAAAAGTGCCTGCCATTCACTGGCACTTTGTCACACAATCCCATCCATCAGAGTTAACCGCAGGCTATTACAATACTTTTGACAGGGATGGATACTTACCCATTGCTCGCATGTTTAGTAAGTATGGATTCACAATGTGCTGCTCTTGTTTTGAATTGCAAGATGCAGTAATGAAGAAGATAAATCCAGATGCTAGCCCTGAAGGTTTTCTTCGACAGCTTTTGCTGGTTGCTAGGCTTTGTGACATATCACTTGAAGGTCAAAATTTTTCAACTGATTTGGATGATGATGCATTCACCCAAGTGCTGAAGACGTCAAAGTTTTTCTCAAATGGGATTGAAAGGCGCCCCTTCTCATTCAATTTCGTAAGAATGGACAAAAAAATGTTTGAATCCCGAAACTGGGATCGGTTTACTCGTTTTGTGAGGCAAATGTCTGGTGGAAATATTTTTCGAGCCAGATTAAAATCTGCGCGTGACATACGGTTGAAGACCACTCCATGGGCTGCTGAAGTGGGACTGTTGTACCAGCACTCTTGA	1821	0.4849	MLCYAMHSSLIHSQHTLLNHTHSCRSLTHPSILFLHSIQTLTHNLHFPTNNNNNNNMIVASQSTATFSPSFPSSTRSDSTRPTRFPLLTNATRRPPSRRLAISSRFNSSESSGPGGSVSPGNGDAPYELHHDFSPQRDRNRSPVFVTLPVNSVGPEGKLWRPKAMMFSLKALAAAGVEGVVVEMWWGLVERNEPRVYDWRGYRELVMMASMCGLKVRAVLAFHQYGTGPDDPNWIPLPLWVLDELHKDPELAYSDRFGRRSVEYISLGCDILPVLRGRSPIQAYADFMRDFRDTFRPSLGVIITGVQIGMGPGGELRYPSFSPQKPNPAQPHELGEFQCYDKFMLASLNACARKIGKREWGNGGPFGTGSLMQNPEHTEFFRNEGGSWNTPYGKFFLEWYSDMLLLHGERICREAETIFRGAEVHILAKVPAIHWHFVTQSHPSELTAGYYNTFDRDGYLPIARMFSKYGFTMCCSCFELQDAVMKKINPDASPEGFLRQLLLVARLCDISLEGQNFSTDLDDDAFTQVLKTSKFFSNGIERRPFSFNFVRMDKKMFESRNWDRFTRFVRQMSGGNIFRARLKSARDIRLKTTPWAAEVGLLYQHS*	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g2860	606	MobiDBLite	consensus disorder prediction	66	87	-	-
	Dod04g2860	606	MobiDBLite	consensus disorder prediction	66	140	-	-
	Dod04g2860	606	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	311	333	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	459	482	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	388	407	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	441	452	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	424	440	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	197	215	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	176	190	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	219	240	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PANTHER	-	59	588	IPR001554	GO:0000272\|GO:0016161
	Dod04g2860	606	PANTHER	BETA-AMYLASE	59	588	-	-
	Dod04g2860	606	MobiDBLite	consensus disorder prediction	101	118	-	-
	Dod04g2860	606	Gene3D	Glycosidases	134	598	-	-
	Dod04g2860	606	SUPERFAMILY	(Trans)glycosidases	140	596	IPR017853	-
	Dod04g2860	606	Pfam	Glycosyl hydrolase family 14	145	568	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g2860	Dod-Chr4	52473665	52476938	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g2860	88	575	Glycoside Hydrolase	AT4G17090	45.010	1.72e-149	441

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g2860	K01177		-	gmx:100805981	884.789

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod04g2860	04	52473665	52476938	Dod04g2860	04	52473665	52476938	ECH