Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2858 ATGCCGGGCCTCGTATCCGTAAAGTCCCCACCGGACGCTCCCCCGCTCCGAATCTCCGTACCCAACACCCCAACCCAGAGATCGGAATCCAACACCAACACCAACACTAACATCAACAACATCCGAACCCCTTCCCCGCTCCCAAAGAAGCCACCCTCACCCTCCCCTTCCTCCCGATCCAAGAAGAAGACCCCCGAAACCCCAACCTCCAACCCCGTCCTCTCAGAGGCCTCACTCGACAACCCCGATCTCGGCCCCTTCCTCCTCAAGCTGGCCCGCGACACCATCGCATCCGGCGACGGGCCAGCCAAGGCCCTTGACTACGCCATCCGGGCCTCCAAGTCCTTTGAACGGTGCGCTGTCGACGGCGAGCCCAGCCTCGACCTCGCCATGAGCCTCCACGTCCTCGCCGCCATCTATTGCAGCTTGGGCAGGTTCGAGGAGGCCGTGCCCGTGCTGGAGCGCGCGATTCTCGTGCCTGACGTGTCCAGAGGTGCGGATCACGCGCTCGCCGCCTTCTCAGGGTACATGCAGCTTGGGGACACGTTCTCCATGCTTGGCCAGGTGGACAAGTCCATCGCCTCCTATGACCAGGGCCTCCAGATTCAGATCCAGGCCTTAGGCGACACCGATCCCAGGGTCGGAGAAACCTGCAGATACTTGGCTGAGGCCAATGTTCAGGCGATGCAATTTGACAAGGCAGATGAGCTGTGCAAGAAGACTCTTGAGATTCACCGTGTGCACAGTGAACCGGCTTCTCTTGAAGAGGCGGCTGATAGAAGGCTTATGGCCCTTATATGCGAGGCAAAAGGGGATTATGAAGGAGCTCTTGAGCACCTTGTTCTTGCCAGCATGGCAATGATTGCAAATGGACAGGACAATGAAGTTGCTTCTATTGATGTCAGCATTGGAAACATTTACATGTCGCTCTGTCGCTTTGATGAGGCTATCTTCTCGACTGGAAAGCTTCGCGAGTCGAAGTCATACTGTGAAAATGCTCTAAGAATTTACTCAAAACCAGTGCCCGGAACCACGGCAGAAGAGATTGCTGGAGGTTTAACAGAAGTTTCAGCCATTTTTGAATCTGTGGATGAGTCCGAGGAGGCACTGAAGCTCCTACAAAAGGCAATGAAATTGTTGGAGGATAAACCAGGACAGCAGAGCACAATTGCAGGAATAGAAGCTCGAATGGGAGTGATGTTTTACATGATTGGGAGGTATGAAGAAGCAAGGAACTCTTTTGAGAGTGCTGTAGCAAAACTCAGAGCCAGCGGAGAAAGGAAGTCTGCTTTCTTTGGAGTTGTTTTGAACCAGATGGGGTTGGCATGTGTGCAGTTGTTCAAGATAGACGAGGCTGCTGAATTATTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCATGTCATCAAGATACTCTAGGAGTATACAGCAATCTTGCGGCAACTTATGATGCTATGGGAAGAGTGGGAGATGCAATTGAGATCTTAGAATATGTCCTTAAATTGCGGGAAGAGAAGCTTGGGATAGCAAATCCTGATTTTGAAGATGAGAAGCGTAGGCTGGCTGAGCTCCTGAAAGAAGCAGGCAAGACACGAGATAGAAAAGCCAAATCTCTGGAAAACCTCATTGATCCCAACTCAAAGAGGACAAAGAAGGAGGGGGCAAAGAGGTGGCCTGGTTTGGGTTTTAGAATTTAA 1704 0.5223 MPGLVSVKSPPDAPPLRISVPNTPTQRSESNTNTNTNINNIRTPSPLPKKPPSPSPSSRSKKKTPETPTSNPVLSEASLDNPDLGPFLLKLARDTIASGDGPAKALDYAIRASKSFERCAVDGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLERAILVPDVSRGADHALAAFSGYMQLGDTFSMLGQVDKSIASYDQGLQIQIQALGDTDPRVGETCRYLAEANVQAMQFDKADELCKKTLEIHRVHSEPASLEEAADRRLMALICEAKGDYEGALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAIFESVDESEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMFYMIGRYEEARNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKEGAKRWPGLGFRI* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2858 567 Coils Coil 516 536 - -
Dod04g2858 567 Coils Coil 363 383 - -
Dod04g2858 567 MobiDBLite consensus disorder prediction 1 79 - -
Dod04g2858 567 Gene3D Tetratricopeptide repeat domain 173 283 IPR011990 GO:0005515
Dod04g2858 567 MobiDBLite consensus disorder prediction 19 44 - -
Dod04g2858 567 Gene3D Tetratricopeptide repeat domain 284 433 IPR011990 GO:0005515
Dod04g2858 567 Gene3D Tetratricopeptide repeat domain 434 558 IPR011990 GO:0005515
Dod04g2858 567 SMART tpr_5 433 466 IPR019734 GO:0005515
Dod04g2858 567 SMART tpr_5 130 163 IPR019734 GO:0005515
Dod04g2858 567 SMART tpr_5 350 383 IPR019734 GO:0005515
Dod04g2858 567 SMART tpr_5 215 248 IPR019734 GO:0005515
Dod04g2858 567 SMART tpr_5 391 424 IPR019734 GO:0005515
Dod04g2858 567 SMART tpr_5 257 290 IPR019734 GO:0005515
Dod04g2858 567 SMART tpr_5 173 206 IPR019734 GO:0005515
Dod04g2858 567 SMART tpr_5 475 508 IPR019734 GO:0005515
Dod04g2858 567 MobiDBLite consensus disorder prediction 532 567 - -
Dod04g2858 567 SUPERFAMILY TPR-like 263 415 IPR011990 GO:0005515
Dod04g2858 567 Pfam Tetratricopeptide repeat 435 507 - -
Dod04g2858 567 MobiDBLite consensus disorder prediction 57 77 - -
Dod04g2858 567 Pfam MalT-like TPR region 134 284 IPR041617 -
Dod04g2858 567 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 319 566 - -
Dod04g2858 567 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 319 - -
Dod04g2858 567 Gene3D Tetratricopeptide repeat domain 77 172 IPR011990 GO:0005515
Dod04g2858 567 SUPERFAMILY TPR-like 125 278 IPR011990 GO:0005515
Dod04g2858 567 PANTHER - 319 566 - -
Dod04g2858 567 PANTHER - 1 319 - -
Dod04g2858 567 MobiDBLite consensus disorder prediction 532 561 - -
Dod04g2858 567 SUPERFAMILY TPR-like 392 533 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2858 Dod-Chr4 52460087 52462631 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2858 - - gmx:100815100 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2858 04 52460087 52462631 Dod04g2858 04 52460087 52462631 ECH