Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2840 ATGCCCATTTCTATGAGCTGTTTTTGCTTAAAGAAAGCTAAACCAAAGACTAAGCAAGAACAATTCATCATTCTTGCTTCGGAGACGTCTTTTACTGTGAATGAGATTGAGGCTTTACTTGATTTGTTTAAAAAGCTAAGAAGTCCAACTATTGACGATGGCTTCATTCACAAGGAGGAGTTCCAGCTTGCACTTCTCAGAAGCAGTAGCAAGCAGAATCTATTTGCAGACAGGGTATTTGATATGTTTGATATTAAGCGTAATGGGGTAATCGAGTTTGGGGAATTTGTTCGCTCCCTGAGCATCTTCCACCCGAATGCATCTAAAGAGAAGAAAATTAAATTTGCATTTAGATTGTTTGACCTTCGGCAGGCTGGATATATTGAGCTCAACGAATTGAAGAAGATGGTCTTGGCTACTCTGACTGAATCAGATATTACAGTTCCAGATGATGCTGTTGAATCAATTGTGGAGAAGACAATGAGGGAGGCTGACTCAAACGGAGATGGGAAGATTGATGAACAAGAGTGGAAAGAATATGTGGCAAAAAATCCCTCTCTTCTGAAGATCATGACTCTTCCATACCTAAAGGACATAACTCTGGCATTTCCCAGTTTTGTTTTGCACACTGAAGTGGAAGATTAG 645 0.3984 MPISMSCFCLKKAKPKTKQEQFIILASETSFTVNEIEALLDLFKKLRSPTIDDGFIHKEEFQLALLRSSSKQNLFADRVFDMFDIKRNGVIEFGEFVRSLSIFHPNASKEKKIKFAFRLFDLRQAGYIELNELKKMVLATLTESDITVPDDAVESIVEKTMREADSNGDGKIDEQEWKEYVAKNPSLLKIMTLPYLKDITLAFPSFVLHTEVED* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2840 214 Gene3D - 24 214 - -
Dod04g2840 214 PANTHER CALCINEURIN B-LIKE PROTEIN 8 5 213 - -
Dod04g2840 214 CDD EFh 112 182 IPR002048 GO:0005509
Dod04g2840 214 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Dod04g2840 214 ProSiteProfiles EF-hand calcium-binding domain profile. 152 187 IPR002048 GO:0005509
Dod04g2840 214 PANTHER CALCINEURIN B 5 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Dod04g2840 214 SMART efh_1 156 184 IPR002048 GO:0005509
Dod04g2840 214 SMART efh_1 75 103 IPR002048 GO:0005509
Dod04g2840 214 SMART efh_1 112 140 IPR002048 GO:0005509
Dod04g2840 214 Pfam EF-hand domain pair 110 180 IPR002048 GO:0005509
Dod04g2840 214 SUPERFAMILY EF-hand 26 206 IPR011992 -
Dod04g2840 214 Pfam EF hand 77 98 IPR002048 GO:0005509
Dod04g2840 214 ProSitePatterns EF-hand calcium-binding domain. 165 177 IPR018247 -
Dod04g2840 214 PRINTS Recoverin family signature 79 100 - -
Dod04g2840 214 PRINTS Recoverin family signature 17 31 - -
Dod04g2840 214 PRINTS Recoverin family signature 172 192 - -
Dod04g2840 214 PRINTS Recoverin family signature 126 144 - -
Dod04g2840 214 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2840 Dod-Chr4 52334050 52338137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2840 5 214 EF-hand Containing Proteins AT4G17615 58.095 1.53e-89 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2840 K06268 - fve:101293976 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2840 04 52334050 52338137 Dod04g2840 04 52334050 52338137 ECH