Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2839 ATGGGGTGCTGCTGCACCAAACAGCGGCTTAGGAAAGAAGATATAGCAGTTCTTGCAGCCCAAACCAGTTTTAATATTTCTGAGATTGAAGCAGTGCATGAGTTGTTCAAGAAATTAAGCAGCTCCATAGTTGATGACGGGCTTATCAGCAAAGAAGAATTTCAGCTAGGCTTATTTGGAAGCAGTAAAAAAAGAAGCCTCTTTGCCGATAGGGTATTTCATTCATTTGACGCAAAAAATGATGGGGTGATAGAATTTGGGGAGTTTGTTCGAGGTCTGAGCGTCTTCCATCCAGCAGCGCCCCAACCACAAAAAGCAGCTTTTGCGTTTCGGCTCTATGATATATGGCAAAGAAGCTATATTGAACGTGACGAGGTAAGAGAAATGATACTGGCACTACTAAGCGAGTCCGATTTGGTTCTTTCTGATGACATAATTGAGGTCATAATTGATAAGGCCTTTGAAGAAGCAGATTCAAAAGGAGATGGAAAGATTGATCCAGAGGAGTGGCAAGAATTCGTGACTCGAAATCCATCCGTACTGAGGAATATGACAATTCCAAATTTGAAGGACCTCAATACTCAGTTTCCTAGTTTTGAACTAAGATCAGACATTGAAGATGATATAAAGCAGCAGCCACTGAAAGACAACTACCTCACTTAA 663 0.4133 MGCCCTKQRLRKEDIAVLAAQTSFNISEIEAVHELFKKLSSSIVDDGLISKEEFQLGLFGSSKKRSLFADRVFHSFDAKNDGVIEFGEFVRGLSVFHPAAPQPQKAAFAFRLYDIWQRSYIERDEVREMILALLSESDLVLSDDIIEVIIDKAFEEADSKGDGKIDPEEWQEFVTRNPSVLRNMTIPNLKDLNTQFPSFELRSDIEDDIKQQPLKDNYLT* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2839 220 CDD EFh 105 175 IPR002048 GO:0005509
Dod04g2839 220 Gene3D - 14 208 - -
Dod04g2839 220 SMART efh_1 149 177 IPR002048 GO:0005509
Dod04g2839 220 SMART efh_1 68 96 IPR002048 GO:0005509
Dod04g2839 220 Pfam EF hand 70 91 IPR002048 GO:0005509
Dod04g2839 220 Pfam EF hand 150 174 IPR002048 GO:0005509
Dod04g2839 220 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Dod04g2839 220 PANTHER CALCINEURIN B 1 206 IPR045198 GO:0005509|GO:0019722|GO:0019900
Dod04g2839 220 SUPERFAMILY EF-hand 15 191 IPR011992 -
Dod04g2839 220 PRINTS Recoverin family signature 10 24 - -
Dod04g2839 220 PRINTS Recoverin family signature 119 137 - -
Dod04g2839 220 PRINTS Recoverin family signature 72 93 - -
Dod04g2839 220 PRINTS Recoverin family signature 165 185 - -
Dod04g2839 220 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Dod04g2839 220 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 206 - -
Dod04g2839 220 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2839 Dod-Chr4 52330563 52333090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2839 22 199 EF-hand Containing Proteins AT5G24270 62.921 2.43e-82 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2839 K06268 - vra:106766823 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2839 04 52330563 52333090 Dod04g2839 04 52330563 52333090 ECH