Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2816 ATGGATGATAGTCCGGCAAGATTAAAGATCATCCCTGATCACTTTCAAGTTCCAACATCAAGCATAGAATCTCCTGAAAGCAGAACATCACCTGTCACAGAATCTGGAACTGATCAATCTTCGAGGTCCTTGCGCCATCTGCGGACTCGAAGAAGATTAAGGAAAGATTTCATGGTGAACTTGTTTACACGTAGGTTATCATGGGGATCGAGTGGTGGAGGTCAGGAAAAGGTAGAACTAACTGCTGCAGAATTAGAGTCACTTAGATCAGACCTTGCTGATATAGAAGAGAGGGAAGGTCACTTGAAAGCTCGGTTGGAACATATTGATGAAGTTTTGCGGTCAGCTCGTCTTTCTGGCTATTTATACATTCGAACTAGATGGGCAACCCTACCGGGAGAACCTCCACCTATTGATGATGCAGAAGTAGACGATCGGCTTCCTCGCTTTGTCGTTCTTCATGGAGCATGTATATTCTTATATTTGTTGTGTACAGATCTAAGCCCTCAGGACTCAACCCTTCTATCGGATATTGTTGAAGTAGGGAGATTACCAAGTTTTAAACGTGAAGATGATGAGATTCATTATGCCTTCTATATTTTAACTTGTCATGGATTACGATATGAGTGCTCAAGCAGTTCTAAGATACAGGTAGACTGTTGGTTATCAGCTTTACAAACTGACTGCAAAGTGGAACCTGATACATCAGTTTGCAAATCTGCTTCTAGAGCCGCGAGGTCCCTTCTCTCTGCTTCTTCTAAGGCCTCTCGTTTTTACTCTGGAGGACGAGCAGCAGCAGCTGCTGCAGCTGTTACATTCACCAGCAAAGTGCCCTTTCTTGCTTCAAATTATGGAAGGGCCGGTTCTCAGAGTGCATTCACAACATGGATCTCAGGAGCTCTCGCTCTTCCTGCTGCAGCGTACATGCTTCAGGACCAAGAGGTGCATGCTGCTGAGCTGGAGCGCACTTTCATTGCCATTAAGCCAGACGGAGTGCAAAGAGGGCTGATCTCAGAGATCATATCTCGTTTTGAGCGTAAAGGGTACAAGCTAGTGGGAATTAAAGTATTGATTCCTTCAAAGGAGTTTGCCCAAAAGCATTATCATGACCTGAAAGAGAGACCCTTCTTCAATGGGCTGTGTGAATTCCTAAGTTCTGGACCTGTCATTGCAATGGTGTGGGAAGGACAGGGAGTTATTTCCTATGGCAGAAAACTGATTGGAGCCACAGACCCTCAGAAATCAGAGCCTGGAACTATTAGGGGTGATCTGGCTATTGTTGTTGGAAGAAATATCATCCATGGAAGCGATGGTCCAGAGACTGCAAAGAACGAGATTAAGTTGTGGTTTAAGCCAGAAGAGTTGGTCAGTTTCACTAGCAATGCTGAGAGGTGGATTTATGGGGTCAATTGA 1413 0.4473 MDDSPARLKIIPDHFQVPTSSIESPESRTSPVTESGTDQSSRSLRHLRTRRRLRKDFMVNLFTRRLSWGSSGGGQEKVELTAAELESLRSDLADIEEREGHLKARLEHIDEVLRSARLSGYLYIRTRWATLPGEPPPIDDAEVDDRLPRFVVLHGACIFLYLLCTDLSPQDSTLLSDIVEVGRLPSFKREDDEIHYAFYILTCHGLRYECSSSSKIQVDCWLSALQTDCKVEPDTSVCKSASRAARSLLSASSKASRFYSGGRAAAAAAAVTFTSKVPFLASNYGRAGSQSAFTTWISGALALPAAAYMLQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVLIPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAIVVGRNIIHGSDGPETAKNEIKLWFKPEELVSFTSNAERWIYGVN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2816 470 SUPERFAMILY PH domain-like 110 227 - -
Dod04g2816 470 Hamap Nucleoside diphosphate kinase [ndk]. 320 455 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Dod04g2816 470 PANTHER OS05G0595500 PROTEIN 1 237 - -
Dod04g2816 470 ProSitePatterns Nucleoside diphosphate kinases active site. 431 439 IPR023005 -
Dod04g2816 470 Gene3D - 311 468 IPR036850 -
Dod04g2816 470 SUPERFAMILY Nucleoside diphosphate kinase, NDK 320 467 IPR036850 -
Dod04g2816 470 CDD NDPk_I 321 450 - -
Dod04g2816 470 PRINTS Nucleoside diphosphate kinase signature 367 386 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Dod04g2816 470 PRINTS Nucleoside diphosphate kinase signature 431 450 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Dod04g2816 470 PRINTS Nucleoside diphosphate kinase signature 387 404 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Dod04g2816 470 PRINTS Nucleoside diphosphate kinase signature 408 424 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Dod04g2816 470 PRINTS Nucleoside diphosphate kinase signature 323 345 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Dod04g2816 470 MobiDBLite consensus disorder prediction 1 45 - -
Dod04g2816 470 Coils Coil 78 105 - -
Dod04g2816 470 PANTHER OS05G0595500 PROTEIN 1 237 - -
Dod04g2816 470 MobiDBLite consensus disorder prediction 17 42 - -
Dod04g2816 470 SMART ndk_5 320 457 IPR034907 -
Dod04g2816 470 Pfam Nucleoside diphosphate kinase 321 454 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2816 Dod-Chr4 52194327 52203680 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2816 K00940 - cam:101499802 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2816 04 52194327 52203680 Dod04g2816 04 52194327 52203680 ECH
Dod02g1169 02 14486558 14493195 Dod04g2816 04 52194327 52203680 PCT