Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2754 ATGGGACACGGCGAAAAGGGTCGACACTTCAAGAAGTTGAAAGGCTCGGGGAAATTCGTTAGTGCACTTCAGACATCCCTGATATCCGAAGATAGCCGAAGAGGAATCCCCGACGACGATGACGTGTATGGAGGCGAAGAATCATACGATGATGACGATGGCAGAACCAAAGATTTTAGCAAATTAGAGCTGAAACAGGATCACCCCAATCGCCCTCTCTGGGCCTGTGGCAATGGCCGCATATTTCTCGAGACTTTCTCTCCTTTGTACAAGCAAGCTTATGATTTTCTTATTGCTATTGCCGAGCCCGTTTGCAGGCCGGAATCAATGCACGAATACAACCTTACTCCGCACTCGCTGTATGCCGCTGTTTCGGTTGGCCTGGAGACAGAAACAATCATAGCTGTTTTGAACAAGTTATCCAAGACCAAGCTTCCCAAGGAGATGATTAAATTTATACATGACTCCACTGCAAATTATGGCAAAGTGAAGCTGGTGCTTAAGAAGAATCGCTACTTTGTTGAATCTCCATTTCCCGAGGTATTGAAGACATTGCTTAGGGATGAAGCCATATCTCGAGCTAGGATAACTTCTGAGGGTACAAATGCAGATGGATTTACAATCAGCAAAGCAGCAGGTGAAATTGAAGGCACTCATGATGAGTTGCTAAATGAAGCTGAAGTGGCTGCAGCTGCAGAAGAGAAAGAAGCTCATTCATTTGAAATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGCTGCTTGCCAAATGCATTGAATTATCCCATGTTGGAGGAGTATGACTTCAGAAACGATACAGTGAACCCAGACCTCGACATGGAACTAAAGCCTCAAGCACAACCACGGCCATATCAGGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGTAGGGCAAGATCTGGTATAATAGTTCTGCCTTGTGGTGCTGGAAAGTCCCTAGTTGGTGTTTCTGCAGCTTGCCGGATTAAAAAGAGCTGCCTTTGTTTGGCAACAAATGCTGTCTCTGTAGATCAGTGGGCTTTTCAGTTTAAACTGTGGTCAACTATTCGAGAAGAACAGATCTGTCGTTTTACATCTGATAGTAAAGAGAGATTTCGTGGTAATGCTGGAGTTGTTGTGACAACATATAATATGGTTGCTTTTGGTGGTAAACGGTCTGAAGAATCTGAAAAGATCATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTACATGTGGTTCCGGCCCATATGTTTCGAAAAGTCATTAGTCTCACTAAATCTCACTGCAAACTTGGGCTCACTGCTACACTTGTGAGAGAGGACGAAAGGATTACAGATCTGAATTTTCTAATTGGTCCCAAGCTGTACGAGGCAAATTGGTTAGATTTAGTAAAAGGTGGTTTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACCAAAGAGTTTTTTTCTGAGTATCTGAAGAAAGAGAACTCCAAGAAGAGGCAGGCACTTTATGTGATGAATCCAAATAAGTTCAGAGCATGTGAGTTTCTCATAAATTACCATGAAAGGGCACGTGGTGATAAAATTATTGTCTTCGCTGATAATCTTTTTGCTCTCACTGAGTATGCCATGAAACTGCGCAAACCAATGATATATGGTGCGACAAGCCATGTTGAGAGGACAAAAATTCTACAAGCATTCAAAACTAGCAAAGACGTAAACACTATTTTTCTTTCCAAGGTTGGTGACAACTCAATCGATATTCCGGAAGCAAATGTGATAATTCAAATCTCATCACATGCTGGTTCAAGGCGTCAAGAAGCGCAACGTCTGGGTCGTATTCTTAGGGCAAAGGGAAAGCTTCAGGACAGGATGGCCGGGGGTAAAGAGGAGTATAATGCATTCTTTTATTCCCTTGTGTCAACTGATACCCAGGAGATGTATTACTCAACTAAGAGGCAGCAATTTTTAATTGATCAGGGTTATAGCTTTAAGGTAATTACAAGCTTGCCTCCGTCTGATGAAGGACCTCGTTTGAGCTATTATCATCTTGAGGATCAACTGGCACTTCTTGCAAAGGTATTGAGTGCTGGTGATGATGCAGTCGGATTAGAACAGCTAGAAGAAGATACGGATGAAATAGCTCTAAATAGTGCCCGTCGTTCTCAAGCATCAATGAGTGCAATGTCAGGTGCCAAAGGGATGGTTTACATGGAGTACAGTACTGGGCGTAACAAAGGCCAAGCACAGATTAAGAGCAAGCCGAAAGATCCATCAAAGAGACACTACTTGTTTAAGAAACGATATGGTCCAACCTGA 2331 0.4273 MGHGEKGRHFKKLKGSGKFVSALQTSLISEDSRRGIPDDDDVYGGEESYDDDDGRTKDFSKLELKQDHPNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFVESPFPEVLKTLLRDEAISRARITSEGTNADGFTISKAAGEIEGTHDELLNEAEVAAAAEEKEAHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGPRLSYYHLEDQLALLAKVLSAGDDAVGLEQLEEDTDEIALNSARRSQASMSAMSGAKGMVYMEYSTGRNKGQAQIKSKPKDPSKRHYLFKKRYGPT* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2754 776 CDD DEXHc_XPB 280 449 - -
Dod04g2754 776 MobiDBLite consensus disorder prediction 30 57 - -
Dod04g2754 776 MobiDBLite consensus disorder prediction 748 776 - -
Dod04g2754 776 SMART ultradead3 284 465 IPR014001 -
Dod04g2754 776 PANTHER DNA REPAIR HELICASE XPB1-LIKE 4 773 - -
Dod04g2754 776 Pfam Type III restriction enzyme, res subunit 287 443 IPR006935 GO:0003677|GO:0005524|GO:0016787
Dod04g2754 776 Coils Coil 223 243 - -
Dod04g2754 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 516 682 IPR001650 -
Dod04g2754 776 CDD SF2_C_XPB 480 644 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 473 495 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 634 657 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 531 553 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 300 322 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 269 295 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 725 744 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 157 176 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 71 91 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 511 526 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 407 427 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 597 622 - -
Dod04g2754 776 PRINTS Xeroderma pigmentosum group B protein signature 578 596 - -
Dod04g2754 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 716 IPR027417 -
Dod04g2754 776 Pfam Helicase conserved C-terminal domain 73 196 IPR032830 -
Dod04g2754 776 SMART helicmild6 544 622 IPR001650 -
Dod04g2754 776 TIGRFAM rad25: DNA repair helicase rad25 58 771 IPR001161 GO:0003678|GO:0006289|GO:0006367
Dod04g2754 776 Gene3D - 278 469 IPR027417 -
Dod04g2754 776 Pfam ERCC3/RAD25/XPB C-terminal helicase 469 717 IPR032438 -
Dod04g2754 776 PANTHER RAD25/XP-B DNA REPAIR HELICASE 4 773 - -
Dod04g2754 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 299 461 IPR014001 -
Dod04g2754 776 Gene3D - 470 711 IPR027417 -
Dod04g2754 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 463 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2754 K10843 - gmx:100789550 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2754 04 51459981 51467315 Dod04g2754 04 51459981 51467315 ECH