Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2743 ATGGCTTTGCAGCAGTTTCTCTCAGTTCCACACTTTCTTTCTGTTTCTCCTTCTCGTGCAACCACACCCAACTCCATAACCGTAAAATCTCAACACTTTCCGCCTCTTCCTCCCACACCCTTCCTTCGTTTTCTAAACCCGACTCTTCTTCTTCGTTCTCCACCTCCCGGAGCTATCGGCCCCGACGGAAAGTTCTACCCTAACACCGCCGACGATGACCCCCCAGAGGCCCCCGAGGACTCCTCCCACGGGTTCTCCACCTTCCAGCAAATCCAAGCGCAGGCCGCGCGTGCCCGCCACCTCCAAGAAGAGGACTTCAAGAAGAATCAGTCCACCTTCCTCGCCGCCATCGCCGATGTCGAGGACGCCCCCGACAACCCTTCCCCTCTCGATTCCAACGACAACTCCGGCGACGACCTCTTCGGAGAAATAGACAAAGCCATCGCCCTGAAGCGCAAGGAGTTCGTCAAGCAAGGGCTTCTCGAACCCAATCCCCGGAAACTACCCGCCATTGAAGACCTCGACGAGCTTCAGCCAGAGGAGGTCGTCGATCTGCAGGAAATCGACGAGCTTCAAGGCCTCAGAGTTGTTTCAGCGGACGATACCGATGAAGGTTTGGGTGATGGTGGTGAATTCGAGCGCCAAAATCGAGGTTCTTCTTTGCAATCTCAATCTCAGTCTCCGTTTGATATAGATTTTGATAGCTATGGGAGGAGTAAGGCTAGGATTGTGGAACCTAAGTTTAGGATGAGTTTGGCCGAGCTTTTGGATGAGAGCAAGGTTGTCCCTCTTTCTGTGTCTGGTAACTTGGAGGTTGAGATCACTGGGATTCAGCATGATTCCAGGATTGTCACTTCTGGTGATTTGTTTGTGTGCTGTGTTGGAAGGAAAACTGATGGCCACTTGTTCTTGACTGAGGCTGATAAGAGAGGAGCTGTTGCTGTTGTTGCCAGCAAAGAGATTGATATTGAGGAAACCTTGGGCTGCAAGGCATTGGTCATTGTGGAAGATACCAATGCTGTTCTTCCTGTGTTGGCTGCTTCGTTTTATAGGTATCCTTCCAAGAATATGGCGGTTATTGGGATAACTGGGACCTATGGCAAGACGACTACCACTTATTTGATAAAAAGCATGTATGAGGCGATGGGGCTGCGGACCGGAATGTTCAATTCGGTTGCTTGTTTTGTGCATGGGGATAACCAGTTGGAGTCGCCCAGTATGAGCCCTGATGCTGTTTTAGTTCAGAATTTGATGGCAAAGATGCTTCACAATGGGACTGAAGCTTTGGTCATGGAGACTTCTTCTGATGGACTGGCACAGCAGAAGTGTGATGAGGTTGATTTTGATATCGCGGTTTTTACGAATTTGACTGAGGAGGGGGATAGAGATGCGAAGGCTAAGCTGTTCTCGAGAATGGTGGATCCTGAACGGCACAGGAAGGTTGTCAACATTGATGATCTGAATGCACCTTTCTTCGTTTCGCAAGGGAGCCCGGAAGTTCCTGTTGTGACGTTCGCATTGGAGAATAAGAGTGCAGATGTTCATCCCTTGAAGTTTGAACTATCCCTGTTTGAGACACAGGTGTTGGTTAATACGCCCACTGGCATACTAGAAATTTCATCAGGTTTACTTGGAAAGCATAATATTTACAACATTCTTGCTGCCGTGGCAGTTGGCGTCGCTGTCGGGGCACCGTTGGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGTAGGTGTGAACTAATTGATGAGGAACAAGCGTTTGGGGTGATAGTGGACTATGCACATACTCCAGATGCCTTGTCTAGATTGCTTGATAGTGTAAGAGAGCTTGGACCTCGCCGGATTATAACTGTTTTCGGCTGCTGTGGTGAGGGTGACAGGGGGAAGAGACCTGTGATGACCAAGATAGCAACAGATAAAAGCGAAGTGACCATGCTGACATCAGACAATCCCAAGAATGAAGATCCATTGGATATTTTGGATGATATGTTGGCTGGGGTAGGATGGTCAATGCAGGACTACCTGAAATATGGACAGAATGACTACTACCCACCCCTTCCAAATGGTCATAGGCTTTTCCTCCATGACATTAGGAGGGTAGCTGTGCGAGCTGCGGTTGCAATGGGTGAGGAGGGCGATGTGGTTGTGGTTGCTGGCAAAGGCCATGAAGCATATCAAATAGAAGGTGATAAGAAGGATTTCTTTGATGATCGAGAAGAGTGCCGGGAGGCATTGCAGTATGTAGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTGCCAGAGAGCCACTGA 2325 0.4912 MALQQFLSVPHFLSVSPSRATTPNSITVKSQHFPPLPPTPFLRFLNPTLLLRSPPPGAIGPDGKFYPNTADDDPPEAPEDSSHGFSTFQQIQAQAARARHLQEEDFKKNQSTFLAAIADVEDAPDNPSPLDSNDNSGDDLFGEIDKAIALKRKEFVKQGLLEPNPRKLPAIEDLDELQPEEVVDLQEIDELQGLRVVSADDTDEGLGDGGEFERQNRGSSLQSQSQSPFDIDFDSYGRSKARIVEPKFRMSLAELLDESKVVPLSVSGNLEVEITGIQHDSRIVTSGDLFVCCVGRKTDGHLFLTEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNAVLPVLAASFYRYPSKNMAVIGITGTYGKTTTTYLIKSMYEAMGLRTGMFNSVACFVHGDNQLESPSMSPDAVLVQNLMAKMLHNGTEALVMETSSDGLAQQKCDEVDFDIAVFTNLTEEGDRDAKAKLFSRMVDPERHRKVVNIDDLNAPFFVSQGSPEVPVVTFALENKSADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGVAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELGPRRIITVFGCCGEGDRGKRPVMTKIATDKSEVTMLTSDNPKNEDPLDILDDMLAGVGWSMQDYLKYGQNDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHEAYQIEGDKKDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2743 774 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 250 750 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Dod04g2743 774 Pfam Mur ligase middle domain 362 558 IPR013221 GO:0005524|GO:0009058|GO:0016881
Dod04g2743 774 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 579 751 IPR036615 GO:0009058|GO:0016881
Dod04g2743 774 PANTHER MUR LIGASE FAMILY MEMBER 228 764 - -
Dod04g2743 774 MobiDBLite consensus disorder prediction 53 85 - -
Dod04g2743 774 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 228 764 - -
Dod04g2743 774 MobiDBLite consensus disorder prediction 215 229 - -
Dod04g2743 774 Gene3D - 251 351 - -
Dod04g2743 774 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 272 751 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Dod04g2743 774 Pfam Mur ligase family, catalytic domain 273 350 IPR000713 GO:0009058|GO:0016881
Dod04g2743 774 Gene3D - 584 761 IPR036615 GO:0009058|GO:0016881
Dod04g2743 774 SUPERFAMILY MurE/MurF N-terminal domain 250 353 IPR035911 -
Dod04g2743 774 MobiDBLite consensus disorder prediction 199 229 - -
Dod04g2743 774 Gene3D - 353 582 IPR036565 GO:0005524|GO:0009058
Dod04g2743 774 Pfam Mur ligase family, glutamate ligase domain 579 662 IPR004101 GO:0009058|GO:0016881
Dod04g2743 774 SUPERFAMILY MurD-like peptide ligases, catalytic domain 353 576 IPR036565 GO:0005524|GO:0009058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2743 - - qlo:115971280 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2743 04 51338889 51343198 Dod04g2743 04 51338889 51343198 ECH