Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2543 ATGAGAGTTTTTGGTAATAGATTCTTTTTCCACAAGAACCTGCAGAGAGGTGAGAATAGCAAGTGTTACAAGAAACGTTTAGGATGTTCAGCTGCTGTTAGGGATGATTCTCTTTTGCCTTCGATTGAGCAATTGATCGATGCACAGGTCATATATTCTGTTGCTCCTGCCATGGGCCACAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCTGCAGTTGTGAATGCTCTAGAAGAAATGAAACTCACTTCAAAGTTCCGTGGCTCTGAGGTAATTGAACTTCAAAATTTTGAGCCTGCATCAATAGATGACATTGCAAGTGTGCATGCAAGATCCTATGTTTCTGGCCTTGAGAAGGTTATGGATCAAGCTTCGGAGAAGGGCCTAATTTTCATTGATGGATCTGGACCAACATATGCTACTGCCACTACCTTCCAGGAGTCAATAGTTGCAGCTGGTGCTGGATTAGCCTTACTTGACTCAGTGGTTGCAGCTTCAAAGAGAAGCAGAGATCCACCCACCGGTTTCGCTTTGATAAGACCACCAGGACACCATGCTGTTCCACAAGGACCAATGGGCTTCTGTGTTTTTGGAAATGTGGCCATTGCAGCTCGTTATGCTCAGCGTGTTCACGGACTAAAGCGTGTATTTATAATTGACTTTGATGTTCACCATGGGAATGGAACAAATGATGCTTTCTATGATGATCCAGATATATTTTTCCTTTCAACTCATCAAGATGGAAGCTATCCTGGTACTGGTAAATTTGATGAAGTGGGTAGTGGAGATGGTGAAGGAACCACACTAAATCTGCCTCTTCCTGGAGGCTCAGGTGATACTGCTATGAGAACTGTGTTTGATGAAGTCATTGTACCGTGTGCTCAAAGATTTAAGCCAGACATCTTCCTTGTTTCTGCTGGGTATGATGGCCACGTGTTGGATCCACTAGCTAATCTTCAATATACAACTGGCACATATTACATGCTTGCTTCCAGTATCAAACAACTAGCAAAAGATTTATGTGGAGGCCGATGTGTGTTTTTCTTGGAGGGAGGATACAATCTCAAGTCTCTTTCATATTCAGTGGCAGACACCTTCCGTGCTCTTCTCGGGGACCGAAGTTTGGCTTCTGAGTTTGATGACCCCAATATTCTGTATGAAGAACCATCCACAAAGGTCAAGCAAGCAATTCAGAGGATAAAAACCATTCATTCCCTGTGA 1227 0.4328 MRVFGNRFFFHKNLQRGENSKCYKKRLGCSAAVRDDSLLPSIEQLIDAQVIYSVAPAMGHNQESHPESHFRVPAVVNALEEMKLTSKFRGSEVIELQNFEPASIDDIASVHARSYVSGLEKVMDQASEKGLIFIDGSGPTYATATTFQESIVAAGAGLALLDSVVAASKRSRDPPTGFALIRPPGHHAVPQGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAMRTVFDEVIVPCAQRFKPDIFLVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDRSLASEFDDPNILYEEPSTKVKQAIQRIKTIHSL* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2543 408 PRINTS Histone deacetylase superfamily signature 183 206 IPR000286 -
Dod04g2543 408 PRINTS Histone deacetylase superfamily signature 301 311 IPR000286 -
Dod04g2543 408 PRINTS Histone deacetylase superfamily signature 217 232 IPR000286 -
Dod04g2543 408 PANTHER HISTONE DEACETYLASE 16 407 - -
Dod04g2543 408 Gene3D Histone deacetylase domain 40 407 IPR037138 -
Dod04g2543 408 CDD HDAC_classII 65 372 - -
Dod04g2543 408 PANTHER HISTONE DEACETYLASE 14 16 407 - -
Dod04g2543 408 SUPERFAMILY Arginase/deacetylase 61 375 IPR023696 -
Dod04g2543 408 Pfam Histone deacetylase domain 65 370 IPR023801 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2543 Dod-Chr4 49263330 49268797 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2543 - - cam:101515579 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2543 04 49263330 49268797 Dod04g2543 04 49263330 49268797 ECH