Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2526 ATGAAGGGTGGGACGGTTCAGATCAGCTGGCACGAGGGCAAGCCCGTCTTAACCCTCGACTTCCACCCTCCCTCCTCCACCCTCGCCACCGCCGGTGCCGATTTCGACATCAAGTTTTGGTCAGTGAAACCATCAGGGGCACAGAAGAAGCTACCCGTAGTTACCTATCTCAATAGCTTTTCTTACCACAGTTCCGCCGTCAATGTGATTCGCTTTTCTTCCTCCGGGGAACTACTTGCCTCTGGTGCTGATGGAGGCGACCTGATAATATGGAAGTTACATTCTACAGACACTGCTCAGACATGGAAGGTTCTCAAGATGTTACGATCTCATCACAAAGACATTCTGGATCTGCAGTGGTCTACTGATGCCACGTATATCATATCTGGATCAGTTGACAATTCTTGCATTATATGGGATGTTAACAAAGGCACTAACCTTCAAACGTTGGATGCCCATGCACATTATGTGCAGGGGGTTGCATGGGACCCTCTAGGGAAGTATGTTGCCTCTCTTAGTTCTGACAGGACATGCCGAATTTACATCAATAAGCCCCATAAATCGAAGGGAATTGAGAAACTCAATTATGTTTGCCAGCAAGTTATTTCCAAGGCAGAACAGCCATTATTAAAGAATTCTAAGTCCACAAAATATCATCTCTTTCATGATGAGACGCTGCCATCTTTCTTCAGAAGATTATCCTGGTCTCCAGATGGTTCATTTTTACTTGTGCCGGCAGGCTGTTACAAAATTGGTACTGCATCTGAATCTGTAAATGCGGCTTACGTGTTTTCTAGAAAAGATCTCTCTCGGCCTGCTATACAGCTTCCCTGTGCAAGCAAAGCCGTTGTTGCTGTACGCTTCTGCCCCATATTTTTTAATCTTCGTGGAACAAACTCAGCTAGCTTGTTTAAGCTCCCATATCGCATCATATTTGCTGTGGCCACGTTGAATTCATTGTACATTTATGACACCGAGAGCACTCCTCCAATAGCTATATTAGCTGGTCTTCACTATGCAGCAGTAACAGACATCACCTGGTCATCTGATGCCCGCTATTTGGCATTGTCTTCACAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGATGAACTTGGAACACCTTTCTCAGACCGAAAAGTCTCAGACAAGGATAGTAGAAGCCCCCAGCAGACAGCCAATGATACTATCATTGTACCACCTGGTAATGTTGATGCAGTAGTAGCAGAAAGTAGCAAAACAGAAGAAGGCAAGGCTGATGACATGGTCATTGAAGCAGTTGCCAATATTGGTGCAGCTGTAGCAGAAAGCGGGAAAGCTTTAACACAAGCGAAGGCTGATGACATGGCCATAGAGTCAGCAGGGAATGTTCAATCAGTTATGCTAGATATTAAGAAAGATGAGGCTGGAGAAAAAGCTGATGCCATTGTCATTGAGGCTTCTGTGAATGTTGAAGAGGTTATATCAGATAGTATGAAAAATGAAGCTGAGGAGAAGGTTGCTGACATGGTCATTGAGCCAGCTGGGAGTGTTAAAGCAGCTGTTTTAGATAGTGGAAAAATTGAAGCAGAAGATACGGCGGAGAAACAGCTATCAAGTTCAGGTGGTGTAAAATGTGGATCAGAAGAGAAGGCAGGGAAACCGCAATCAAGTTTAGGTGGTATAAAACCTGGGCCTGAAGAAAAGGCAGGGAAACAATTTTCCAGTTCAACAAGGACGCCCATCCCAAATAAGCCAGCAAAGAAGCGTATTACTCCTATTGCAATTGATCCCTGA 1779 0.4463 MKGGTVQISWHEGKPVLTLDFHPPSSTLATAGADFDIKFWSVKPSGAQKKLPVVTYLNSFSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHSTDTAQTWKVLKMLRSHHKDILDLQWSTDATYIISGSVDNSCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYINKPHKSKGIEKLNYVCQQVISKAEQPLLKNSKSTKYHLFHDETLPSFFRRLSWSPDGSFLLVPAGCYKIGTASESVNAAYVFSRKDLSRPAIQLPCASKAVVAVRFCPIFFNLRGTNSASLFKLPYRIIFAVATLNSLYIYDTESTPPIAILAGLHYAAVTDITWSSDARYLALSSQDGFCSLVEFENDELGTPFSDRKVSDKDSRSPQQTANDTIIVPPGNVDAVVAESSKTEEGKADDMVIEAVANIGAAVAESGKALTQAKADDMAIESAGNVQSVMLDIKKDEAGEKADAIVIEASVNVEEVISDSMKNEAEEKVADMVIEPAGSVKAAVLDSGKIEAEDTAEKQLSSSGGVKCGSEEKAGKPQSSLGGIKPGPEEKAGKQFSSSTRTPIPNKPAKKRITPIAIDP* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2526 592 Gene3D - 249 410 IPR015943 GO:0005515
Dod04g2526 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Dod04g2526 592 Gene3D - 5 248 IPR015943 GO:0005515
Dod04g2526 592 SUPERFAMILY WD40 repeat-like 13 374 IPR036322 GO:0005515
Dod04g2526 592 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Dod04g2526 592 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Dod04g2526 592 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Dod04g2526 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Dod04g2526 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Dod04g2526 592 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Dod04g2526 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Dod04g2526 592 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 591 - -
Dod04g2526 592 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Dod04g2526 592 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Dod04g2526 592 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Dod04g2526 592 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Dod04g2526 592 MobiDBLite consensus disorder prediction 376 397 - -
Dod04g2526 592 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 591 IPR045145 GO:0006335
Dod04g2526 592 SMART WD40_4 327 367 IPR001680 GO:0005515
Dod04g2526 592 SMART WD40_4 143 182 IPR001680 GO:0005515
Dod04g2526 592 SMART WD40_4 53 92 IPR001680 GO:0005515
Dod04g2526 592 SMART WD40_4 101 140 IPR001680 GO:0005515
Dod04g2526 592 SMART WD40_4 2 41 IPR001680 GO:0005515
Dod04g2526 592 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Dod04g2526 592 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Dod04g2526 592 MobiDBLite consensus disorder prediction 524 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2526 Dod-Chr4 49095739 49101871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2526 25 181 Miscellaneous Gene Families AT5G08390 25.316 3.06e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2526 K10751 - gmx:547606 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2526 04 49095739 49101871 Dod04g2526 04 49095739 49101871 ECH