Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2515 ATGGTGGCTCAGGACGCGGAGCTAAAAGCGGCGAAGGCGGCGTACCGGAACGCCAAGGTGGAGGGCAACCACCGCGAGGAGGCGCGCTGGGCCAACGTCATCGGCGACATCCTCAAGAACAGAGGGGAGTACGTGGAATCCCTCAAATGGCTCCGAATCGATTACGAAGTTTCGCTCAAGCACCTCCCCGAGAAGCACTTGCTCCCTACCTGCCAATCCCTCGGCGAGATCTACCTCCGCCTCGAGCACTTCTCCGACGCCCTAGTTTACCAGAAGAAGCACTTGGAGCTTGCGAGGGACGCTGACGACCTCGTTGAGCAGCAAAGGGCTAGCACGCAGCTTGGCCGCACCTACCACGAGCTGTTCTCGCGATCCGATCACGATCACCACTCGATTCGCAACGCGAAGAAGTATTTCAAGTGCGCGATGGATCTCGCTGTGATTCTGAAGCAGAATCCTCCGAACAGCACGTCATCGTTTCTGAAGGAGTACATTGATGCTCACAACAACATTGGGATGCTGGAAATGGAGCTCGATAACTTGCAAGAAGCGGAGAAGATTCTGACTCGAGGGTTGAAGATTTGTGATGAAGAGGAAGTTAGTGAATACGATGATGGGAGAAGCAGGCTACACCATAACCTTGGGAATGTGTACATGGAGCTGAGGAATTGGGATGAAGCTAGGAGGAATATCAAGAGGGATATTATGATTTGTAATAGGATTGGGCACCGTCAGGGGGAAGCGAAAGGGTATATCAATCTTGGTGAAGTTCATTACAGGACTCAGAAGTATGAGGAAGCGAAGTCCTTTTACGAGAAGGCACTTGCTTTGGCCAGGTCATTGGAGGATGAGGATGCTTTGGTGAGACAGATTGAGCAGAATGTTAGGACTGTGAGAGAAGCTGCCAAAGTGATGGATGAGATGAAGAAGGAAGAGCAGAACCTTAAAAAGCTTAAAAGGGATATTGCCAATGCGAGAGGGACATCCCATGAGCGGAAATGTTTGCTTCAGCAGAATGCGTCTCTTGATCGCCTTGTTGAGAAATCAAGGATGATCTCTGCATGGGAGAAGCATTGTGAATTTGCAAAGGAAAAGAAGAGAATAGCAAGTGAACTTTGTGACAAGCAAAGGCTGGGTGATTCATATCTGGATGTTGGAGAATCATACCAGAAGCTTAGAAAGTTCAACGAAGCAATCAAATGGTACAAAAAGAGTTGGGAAATGTACAGAACAATTGGTAACTTAGAGGGGCAAGCACTGGTGAAAATAAATATTGGCAATGTTTTGGATTCTTCTCATGATTGGAGAGGGGCATTAGATGCATTTACAGATAGTTACAGGATTGCTGTTGAAGCTGACCTTCCTGATGTGCAACTTTCTGCCTTGGAAAATATGCATTATAGCAACATGATAAGATTTGATGATGAAGATGAGACCAGGAGGTTGAAACTGCTTATTGATAAGCTGAAGAATTCAATAGAAAAAGACCCAGAAGCTAGAAACATGCCAGAAGATTGTTGCTCTGAGACTGATACTGAAGCAGATGATAATCTGTCAAACTCTGGGTCTGAAGATTTCTGCTCTCCAAATGCTATTTCTAGGCCAAAATCTATGACTACTGGAGAAGAATGGCAAGATGACATGCCACTTACGTCACTCTATCAGTCCATAAAAGGCTCATCCAGAAAGAGAACAGGCCTCAGGGAAAGTCTTACGAACTCTACCAAGCAAGCCGAGCTGTCACCCAAAAATCTGACAAATTTAACTAGCAATCATCAGGCAGTTGTTGGTCGCAAACGTGTACGTGTCATTCTTTCTGACGATGATGATGATGATGATGAGATAGAGTGTTCAAGCAGAAAGGATCATGATTGCCTTTTAGAAGACAAATCAACTTATGATGCAAATAAGAGTAAAGCCAGTCCTTGCAATATTCAGGTTGCTTTAGAGAATGGATCCAAATCTGCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAATGCTGGAGTCCACCTAGACCCTCTAACACTGGCAGACATTCCAGGTCTTTGAGCAATGACTTAGTTGCTGAACTTGATTTTCCTAGTGGTTCTAAATGTAACACTGATGTCTCTGGCAAACAAAATGGTGCAGCCTATCCTGTGTTGCATAATTCCCAAAATGATCAGTATATTACATGCCGGATTGGAAATGATCTAGTAAACGTAGAAGAAACCTGGTGTACTGCTGGTGATCAGTTGGATATTGAATCTTTCAAAGCAGCAGTTGCATGCTCATACTACTTACAACTTCCTACTCAAAAGAGATCAGATGGTTTGTTGCCAGTTATTCAGCGCCTAAAATGTGCTGGCAGTGATCTAGAATCCTTAGAAACTGTTCAACACCTTAAGGAGCATCTGGGAAATGACACAGTTGAAGCTTCCATTGATGGATGGATTCAGAAGCGTCTAATAAAAATGTACATAGACTTCTGCAAGCAGTTGTCTGAGGTGCCAAATATGAAGGTGCTGAAGAAACTTTACAATTTAGAGGTTTCAGATGATGAAATCACTGTGTCTGAGTGTGACCTGCAAGATTTATCTGTAACCCCATTGATAAATGCACTGCAGTCACAAAAAACATTTTCAATGCTTGACCTCTCTCACAATTTGTTAGGAAATGGGACAATGGAGACACTTAAGAAGGTTTTCACAGCATCAGACCAACATTATGGTGACTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCGACAGCTTTGCTGCAAATTTGTGAGTGCTCAGTGCTATTTGATCGGCTGGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGGTCTTATCTTTCAACTATTTTGAAAAGATGTACAGCGCTGTGTAGCTTGAATGTAGAGAACTGTTGTATCACATCCAGAACAATTCAAAAGATTGCTGATGCGTTGGACTCTAGATCTGTTCTTGCACATCTTTGTATAGGACATAACAGCCCTGTATCTGGAAATGCTATAGTAAATCTGCTGTCCAAGCTTTCTACTTTGAAAAGGTTTTCGGAGCTGAATCTGAGTGGTCTAAAACTAGGCAAACCAGTCCTCGATACCCTTTGCCAGCTTGCAGGTACCTTGACTTTATCAGGACTAGTTCTTGGAGGCACGGGTATCGGAACAGATGGGGCAATGGAATTAGCAGGGTCATTGCTCAAAGGGACTGAAGAGCTTGTGAAACTTGATCTATCGTATTGTGGGCTCACGTCAAACTATGCTGTAAACATCAATGTTAGTTTCTTTTGTTCCATCCTTGACCTGAATCTGGAAGGAAATCCCATTATGCCCGAGGGCAGCAATACTCTATTTTCTCTTCTCATAAACCCACAATGCCGTCTCAAAGTTTTGGTCCTTAGAAAGTGTCAACTTGGGCTTGCTGGAGTTCTTCACATGATTGAGGCACTGGCAGAGAACAGCAGCCTAGAGGAGCTTAATCTTGCTGGTAATTCTGTTCCAAATGAGCTTTACGCTCCAAAATCAGACTCATCATTAAAAAGCTGGTCAGAAAACCACGAGCAGAAACTTGATACTATGAAAGTGGATGGTAATCAAGAGGTACTTTCCTCTGTAAACTTGGACTACAGTCAGCTTGAAGTTGCTGATAGTGAAGATACTCCAGTTAGAGTAGAAGCTGCTGCTTCTGGAATTGACAGCTGTGCCAGTTCATGTCAAAGAAATTCTTCATCTCCAGAGTGCCTTTTCATGCAACAATTTGCAATTGCTATTGGCAAGGCAAAGAACTTGCAGTTACTTGACCTCAGCGATAACTATTTTTCAGCGCAAGCTGCAGAAACTTTCTATAATTCATGGACAGCTTTACGGCCTTCAAGTCAGAAGCACATCACTGAGCATATTATGCATTTCTCAACAAAGGAAGATAAGTGCTGCAGAGTGAAACCGTGCTGCAAGAAAGTTTGA 3969 0.4361 MVAQDAELKAAKAAYRNAKVEGNHREEARWANVIGDILKNRGEYVESLKWLRIDYEVSLKHLPEKHLLPTCQSLGEIYLRLEHFSDALVYQKKHLELARDADDLVEQQRASTQLGRTYHELFSRSDHDHHSIRNAKKYFKCAMDLAVILKQNPPNSTSSFLKEYIDAHNNIGMLEMELDNLQEAEKILTRGLKICDEEEVSEYDDGRSRLHHNLGNVYMELRNWDEARRNIKRDIMICNRIGHRQGEAKGYINLGEVHYRTQKYEEAKSFYEKALALARSLEDEDALVRQIEQNVRTVREAAKVMDEMKKEEQNLKKLKRDIANARGTSHERKCLLQQNASLDRLVEKSRMISAWEKHCEFAKEKKRIASELCDKQRLGDSYLDVGESYQKLRKFNEAIKWYKKSWEMYRTIGNLEGQALVKINIGNVLDSSHDWRGALDAFTDSYRIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDKLKNSIEKDPEARNMPEDCCSETDTEADDNLSNSGSEDFCSPNAISRPKSMTTGEEWQDDMPLTSLYQSIKGSSRKRTGLRESLTNSTKQAELSPKNLTNLTSNHQAVVGRKRVRVILSDDDDDDDEIECSSRKDHDCLLEDKSTYDANKSKASPCNIQVALENGSKSAINVEESSSSFKCWSPPRPSNTGRHSRSLSNDLVAELDFPSGSKCNTDVSGKQNGAAYPVLHNSQNDQYITCRIGNDLVNVEETWCTAGDQLDIESFKAAVACSYYLQLPTQKRSDGLLPVIQRLKCAGSDLESLETVQHLKEHLGNDTVEASIDGWIQKRLIKMYIDFCKQLSEVPNMKVLKKLYNLEVSDDEITVSECDLQDLSVTPLINALQSQKTFSMLDLSHNLLGNGTMETLKKVFTASDQHYGDLTLDLHCNRFGPTALLQICECSVLFDRLEVLNISGNRLTDACGSYLSTILKRCTALCSLNVENCCITSRTIQKIADALDSRSVLAHLCIGHNSPVSGNAIVNLLSKLSTLKRFSELNLSGLKLGKPVLDTLCQLAGTLTLSGLVLGGTGIGTDGAMELAGSLLKGTEELVKLDLSYCGLTSNYAVNINVSFFCSILDLNLEGNPIMPEGSNTLFSLLINPQCRLKVLVLRKCQLGLAGVLHMIEALAENSSLEELNLAGNSVPNELYAPKSDSSLKSWSENHEQKLDTMKVDGNQEVLSSVNLDYSQLEVADSEDTPVRVEAAASGIDSCASSCQRNSSSPECLFMQQFAIAIGKAKNLQLLDLSDNYFSAQAAETFYNSWTALRPSSQKHITEHIMHFSTKEDKCCRVKPCCKKV* 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2515 1322 SMART LRR_RI_2 1043 1070 - -
Dod04g2515 1322 SMART LRR_RI_2 1127 1154 - -
Dod04g2515 1322 SMART LRR_RI_2 1098 1125 - -
Dod04g2515 1322 SMART LRR_RI_2 959 986 - -
Dod04g2515 1322 SMART LRR_RI_2 872 899 - -
Dod04g2515 1322 SMART LRR_RI_2 931 958 - -
Dod04g2515 1322 SMART tpr_5 68 101 IPR019734 GO:0005515
Dod04g2515 1322 SMART tpr_5 379 412 IPR019734 GO:0005515
Dod04g2515 1322 SMART tpr_5 165 198 IPR019734 GO:0005515
Dod04g2515 1322 SMART tpr_5 248 281 IPR019734 GO:0005515
Dod04g2515 1322 SMART tpr_5 208 241 IPR019734 GO:0005515
Dod04g2515 1322 SMART tpr_5 419 452 IPR019734 GO:0005515
Dod04g2515 1322 Pfam Tetratricopeptide repeat 208 280 - -
Dod04g2515 1322 Gene3D Tetratricopeptide repeat domain 162 299 IPR011990 GO:0005515
Dod04g2515 1322 SUPERFAMILY TPR-like 164 447 IPR011990 GO:0005515
Dod04g2515 1322 SUPERFAMILY RNI-like 839 1288 - -
Dod04g2515 1322 Coils Coil 1 21 - -
Dod04g2515 1322 PANTHER PROTEIN TONSOKU 1 1321 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Dod04g2515 1322 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Dod04g2515 1322 Gene3D Tetratricopeptide repeat domain 300 470 IPR011990 GO:0005515
Dod04g2515 1322 Pfam Tetratricopeptide repeat 380 405 IPR019734 GO:0005515
Dod04g2515 1322 MobiDBLite consensus disorder prediction 495 579 - -
Dod04g2515 1322 Gene3D Tetratricopeptide repeat domain 4 161 IPR011990 GO:0005515
Dod04g2515 1322 Coils Coil 164 184 - -
Dod04g2515 1322 Gene3D Ribonuclease Inhibitor 824 1303 IPR032675 -
Dod04g2515 1322 Coils Coil 281 328 - -
Dod04g2515 1322 MobiDBLite consensus disorder prediction 513 579 - -
Dod04g2515 1322 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Dod04g2515 1322 ProSiteProfiles TPR repeat region circular profile. 248 277 - -
Dod04g2515 1322 SUPERFAMILY TPR-like 8 195 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2515 - - aprc:113856161 2058.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2515 04 48960424 48971724 Dod04g2515 04 48960424 48971724 ECH