Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2507 ATGGCAACAAAAGCTTTGGGATTCGCCGTCACCGTGAGCCACCCTTCCAAGCGCTTCGGTTCCAACTCGCCAACACCCACTCCGAAAGTTTGCGTTTTTACCCTCAGATGCTCTGCTGGCAAAGGCGAAAGGCCTTGGAAGACATCAGATGCTAGGCTTGTGCTTGAAGATGGATCAATATGGAAAGCCAAGTCATTTGGTGCTTCAGGAACCCAACTTGGTGAAGTTGTTTTTAATACATCATTGACTGGGTATCAAGAAATTCTAACTGATCCTAGTTATGCTGGTCAATTTGTGCTGATGACAAATCCACATATTGGTAACACTGGCATAAATTTTGATGATGAGGAATCAAGACAGTGCTTCCTTGCTGGTCTAGTAATTAGAAGTTTGAGTATCAGTACTTCAAACTGGAGGTGTGCGGAAACTCTAGGTGATTACTTGGCAAAGAGGAACATCATGGGAATTTATGATGTTGATACACGTGCAATCACACGCAGATTACGGCAAGATGGCAGCCTTATTGGTGTCTTGAGCACTGACAATTCCAAAACAGAGGAAGAACTACTTCAGATGTCTCGTTCATGGGATATTGTTGGTAAGGATATGAATCTGAGGTTTTGGAAACATTTCATTAAAGTGAAACTACATGGCTTTTTCTTTTCTTCTTTTTTCATATTTTCAGGTATTGATCTTATAAGTGGAGTATCATGCCAGTCTCCGCATGAATGGGTTGATAAAACAAAGGAAGAATGGGATTTTAATTCTAAGGGGCCTGGGGAGATCTTCCATGTTGTTGCTTATGATTTTGGAATCAAGCATAATATACTCAGGCGCCTGGCATCTTATGGCTGCAAAATCACTGTTGTGCCATCTACGTGGCCAGCATCAGAAACTTTGAAAATGAAGCCAGATGGGGTACTCTTCAGCAATGGCCCTGGGGATCCATCTGCTGTCCCTTATGCTGTTGAAACAGTAAAGAATATTCTGGGGAAAGTGCCTGTTTTTGGAATTTGTATGGGCCATCAATTGCTTGGCCAGGCTTTAGGAGGCAAAACCTTTAAAATGAAATTTGGTCACCATGGAGGAAATCATCCAGTTCGTAACCTTCGAACTGGCGACGTCGAAATTAGTGCTCAGAACCACAACTATGCGGTGGACCCTGCAACACTGCCAGAAGGAGTGGAGGTTACTCATATCAATCTTAACGATGGAAGTTGTGCTGGTCTTGCCTTCCCTGCTCAAAGAATAATGTCTCTTCAATACCATCCCGAAGCATCACCAGGACCTCATGATTCTGATTACGCATTTAGGGAGTTTGTAGATCTAATGCAGCAGGAAAGAAGCAAGAAACCTGAGCCCCAACTATCAGCAGTGTAA 1380 0.4319 MATKALGFAVTVSHPSKRFGSNSPTPTPKVCVFTLRCSAGKGERPWKTSDARLVLEDGSIWKAKSFGASGTQLGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESRQCFLAGLVIRSLSISTSNWRCAETLGDYLAKRNIMGIYDVDTRAITRRLRQDGSLIGVLSTDNSKTEEELLQMSRSWDIVGKDMNLRFWKHFIKVKLHGFFFSSFFIFSGIDLISGVSCQSPHEWVDKTKEEWDFNSKGPGEIFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMKPDGVLFSNGPGDPSAVPYAVETVKNILGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRTGDVEISAQNHNYAVDPATLPEGVEVTHINLNDGSCAGLAFPAQRIMSLQYHPEASPGPHDSDYAFREFVDLMQQERSKKPEPQLSAV* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2507 459 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 51 445 IPR006274 GO:0004088|GO:0006207|GO:0006541
Dod04g2507 459 Hamap Carbamoyl-phosphate synthase small chain [carA]. 49 448 IPR006274 GO:0004088|GO:0006207|GO:0006541
Dod04g2507 459 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 31 448 - -
Dod04g2507 459 PRINTS Glutamine amidotransferase superfamily signature 419 432 - -
Dod04g2507 459 PRINTS Glutamine amidotransferase superfamily signature 334 345 - -
Dod04g2507 459 PRINTS Glutamine amidotransferase superfamily signature 307 316 - -
Dod04g2507 459 Pfam Glutamine amidotransferase class-I 268 442 IPR017926 -
Dod04g2507 459 Gene3D - 227 448 IPR029062 -
Dod04g2507 459 SUPERFAMILY Class I glutamine amidotransferase-like 258 446 IPR029062 -
Dod04g2507 459 SMART CPSase_sm_chain_2 49 179 IPR002474 -
Dod04g2507 459 CDD GATase1_CPSase 265 441 IPR035686 -
Dod04g2507 459 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 265 279 - -
Dod04g2507 459 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 334 350 - -
Dod04g2507 459 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 351 368 - -
Dod04g2507 459 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 376 387 - -
Dod04g2507 459 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 304 318 - -
Dod04g2507 459 PRINTS Anthranilate synthase component II signature 334 345 - -
Dod04g2507 459 PRINTS Anthranilate synthase component II signature 419 432 - -
Dod04g2507 459 PRINTS Anthranilate synthase component II signature 307 316 - -
Dod04g2507 459 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 53 177 IPR002474 -
Dod04g2507 459 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 264 450 - -
Dod04g2507 459 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 50 194 IPR036480 -
Dod04g2507 459 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 31 448 - -
Dod04g2507 459 Gene3D - 48 197 IPR036480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2507 Dod-Chr4 48881150 48884628 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2507 K01956 - gmx:100776931 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2507 04 48881150 48884628 Dod04g2507 04 48881150 48884628 ECH