Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2346 ATGCATTTGGGCGGGCCTGATATGTATCAAAGCGCTGGCGCACGTCGCCTCCTATACCGTTCTCAGATATCGCAGTACGTGAAAGCAGGGCTTATCGACAAAGCCATCAAAGTGTTCGACGAAATGACCCAATCAAACTGCCGCATGTTCAGCCTCGACTACAACCGCTTCATCGGCGTGCTCCTCCGCCAGTCACGCTTCGACCTCGCCGAGCACTACTACTTCCACCACGTCATCCCAAGAGGCTTCTCCCTCTCCCCGTTCACCTACTCCCGCTTCATCTCCGGCCTCTGCAGGGTCAGGAACTTCACCCTCATCGACAAGCTCCTCCGCGACATGGACTCCCTCGGCTGCCTCCCGGATATTTGGGCCTTCAACATCTACTTGGACCTCTTGTGCCGCGAGAATCGGTTGGACCACGCTCTGGAACTGTTCCATTCCTTGTCCTGCAAGGGAAGGGAGCCTGACATTGTTAGTTACACTATTCTCATTGATGCATTGTGCAAGTCCCGGCGGTTTGATGAGGCTGCTGCGGTCTGGCGCAGTTTGATTGATAAGGGGCTGAGCCCTGATGACAAGGCTTGTGGTGCTCTTGTGGTTGGTTTGTGCTCTGGTGCTAATGTTGATTTGGCTTATGAGCTTGCTGTTGGTGTGATCAAGGGTGGCGTGAAGGTTAATAGTTTGGTTTATAATGCTTTGATTGGTGGGTATTGTAGGATGGGGAGGATTGATAAGGCGCTTGCGATTAAGGCGTTTATGAGCAGGAATGGGTGTGCGCCGGATTTGGTGACTTATAACATCTTGTTGAATTATTGTTGTGAGGAGCTTATGTTGGATGAGGCGGTAAGGTTGGTGGATACAATGGAGAGGAGTGGCGTGGAGCCGGATTTGTATAGTTATAATGAGCTGCTTAAGGGCTTTTGTAAGACTAACCAAGTGGAAAGGGCTTATTTGATAATGGTTGAGAGGATGCAGGCCAAAGGGTTGTGTGACGTTGTTTCTTACAATACCGTTATCAGTGCATTTTGTAAGGCGCGCCGGACTAGGAGGGCTTATGATTTGTTTGAGGAAATGTATAGGAAAGGGATTCAACCGGATGTGGTGACATTCACAATCCTTATAGAAGCATTTCTGCGAGAAGGTAGTTCCCATGTGGGCAAGAAGCTTCTTGATCAAATGACCAAGATGGATCTTGTTCCTGATCATGTATTCTATACGACAATAGTTGATCACCTGTGCAAGACTGGGAAGATTGATATTGCTTATAGTATTTTTCATGACATGGTGGAGAATGGTACAACTCCAGATGTGGTCTCTTACAATGCCCTCATAAATGGGTTTTGCAAGGCTTCCAGAGTTACAGATGCCATGCATCTATATAATGAAATGCAGGTTAAAGCATTCTATCCTGATGAAGTAACTTTCAAGTTGATAGTTGGAGGGCTTATAAGGGAAAACAAGCTTTCAGTTGCCTGTAGGGTTTGGGACCAGATGATGGAAAAGGGTTTTACACTTGACAAACAACTTTCTGAGACTCTAATCAACGCCATTAAATTGAGTGGTGGGACATGA 1572 0.4726 MHLGGPDMYQSAGARRLLYRSQISQYVKAGLIDKAIKVFDEMTQSNCRMFSLDYNRFIGVLLRQSRFDLAEHYYFHHVIPRGFSLSPFTYSRFISGLCRVRNFTLIDKLLRDMDSLGCLPDIWAFNIYLDLLCRENRLDHALELFHSLSCKGREPDIVSYTILIDALCKSRRFDEAAAVWRSLIDKGLSPDDKACGALVVGLCSGANVDLAYELAVGVIKGGVKVNSLVYNALIGGYCRMGRIDKALAIKAFMSRNGCAPDLVTYNILLNYCCEELMLDEAVRLVDTMERSGVEPDLYSYNELLKGFCKTNQVERAYLIMVERMQAKGLCDVVSYNTVISAFCKARRTRRAYDLFEEMYRKGIQPDVVTFTILIEAFLREGSSHVGKKLLDQMTKMDLVPDHVFYTTIVDHLCKTGKIDIAYSIFHDMVENGTTPDVVSYNALINGFCKASRVTDAMHLYNEMQVKAFYPDEVTFKLIVGGLIRENKLSVACRVWDQMMEKGFTLDKQLSETLINAIKLSGGT* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Dod04g2346 523 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 9 519 - -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Dod04g2346 523 Gene3D Tetratricopeptide repeat domain 219 322 IPR011990 GO:0005515
Dod04g2346 523 Gene3D Tetratricopeptide repeat domain 75 218 IPR011990 GO:0005515
Dod04g2346 523 Pfam PPR repeat 88 118 IPR002885 -
Dod04g2346 523 Pfam PPR repeat 23 47 IPR002885 -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 263 296 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 158 191 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 88 122 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 124 157 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 229 261 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 333 367 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 473 506 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 23 48 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 298 329 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 438 472 IPR002885 -
Dod04g2346 523 TIGRFAM PPR: pentatricopeptide repeat domain 404 437 IPR002885 -
Dod04g2346 523 Pfam PPR repeat 222 248 IPR002885 -
Dod04g2346 523 Pfam PPR repeat 397 429 IPR002885 -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Dod04g2346 523 Gene3D Tetratricopeptide repeat domain 323 398 IPR011990 GO:0005515
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 327 IPR002885 -
Dod04g2346 523 Pfam PPR repeat family 331 377 IPR002885 -
Dod04g2346 523 Pfam PPR repeat family 260 309 IPR002885 -
Dod04g2346 523 Pfam PPR repeat family 435 483 IPR002885 -
Dod04g2346 523 Pfam PPR repeat family 120 169 IPR002885 -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Dod04g2346 523 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 9 519 - -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Dod04g2346 523 Gene3D Tetratricopeptide repeat domain 405 521 IPR011990 GO:0005515
Dod04g2346 523 Gene3D Tetratricopeptide repeat domain 14 74 IPR011990 GO:0005515
Dod04g2346 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2346 121 521 Glycosyltransferase AT1G05670 26.866 3.01e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2346 - - aprc:113872581 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2346 04 47301321 47305912 Dod04g2346 04 47301321 47305912 ECH