Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2337 ATGCGGATTCACTCGTGGCTACAAAAAAAATGCTCCTCCGCCAGCTGTGCCACCGCCACCCACCAATCCACCATCTCCATACCCAACAAGAAACAACAACAACAACATGCATCAGACACAAGCAGTTATTCCTCCGGATCCGAAGCACCCACCGCTTCTTCTTCTACAACCTCTCAGGACAGCAGTAGCAGTAGCAGCAGCACCGCCACCCTCCGCAGCGACCTCTCCATACAGACCCTCCCCTCCGTTCCTTCTCTCCAGAAACTCACTCCACAAAGCCTAAACTTCTCCGCCTCCTACCATTGCCAAACCACCCTCACATCACAACCCTCTCGCCCCGTCACATCCCTCGCCGTCCACGGCGACCTCCTCTACGCGGCAACAGCCCACGAAATCAATGTCTACGATCGCCACACGTGCGCCACCCTCCAAACCCTAAACTCAGAAGGCGAATCCTCCGGTTCCACCAAATCCATCACCTTCTGCAAAGAAATGGTCTTCACCACCCACCAAGACTGCAAGATCCGCGTCTGGCAGAACCAACGTTTGTTAACGGCTCTTCCAACCGTCAACGACCGTCTACGCCGTTTCCTCTTCCCGAACAACTACGTCACCGTCCGGCGCCACGAGAAGCGCCTCTGGATCGAGCACGCCGACGCCGTCACGGGACTCGCAGTCTCCAAAGTTAACGGCGTTATATACTCCGTTTCGTGGGACAAGACACTCAAGGTGTGGCGAGTCTCTGACCTGCGTTGTTTGGAGTCCGTGAAGGCTCACGAGGACGCCGTGAACGCGGTTGCAGTGTCCAACGATGGAACCGTGTACACTGGATCCGCCGACAGGAAGATAAGGGTTTGGGCCAAGCCCGCCGGGGAGAAGCGGCACGTTCCGGTGGCGACGCTGGAGAAGCACAGGTCGGCGGTTAACGCGCTGGCGCTAAACGACGACGGTTCGGTCCTGTTTTCGGGTGCGTGCGACCGTTCCATATTGGTGTGGGAGAGAGATGATAGTGCGAATCACATGGTGGTGAGTGGGGCCCTCAGGGGCCATCGGAAGGCGATACTGTGTTTGATCAACGTTTCTGACTTGCTCCTCAGTGGGTCAGCTGATCGGACGGTCAGGGTTTGGAAGCGGGGATGTGATGGACAGTTCTGCTGCCTCGCCGTTCTTGCAGGTCACCGGAAACCGGTTAAGTCCTTGGCTGCAGTACAGGAGTGTGATCAAAATTCCAAAAATGGCGCCGTTTCCGTCTTCAGTGGATCGCTGGACGGTGAGATAAGGAGTTGGCAGGTTTCCATCACGAGCCTGGACGCATCTGATCCGAAATTGAATTGCTAG 1338 0.5643 MRIHSWLQKKCSSASCATATHQSTISIPNKKQQQQHASDTSSYSSGSEAPTASSSTTSQDSSSSSSSTATLRSDLSIQTLPSVPSLQKLTPQSLNFSASYHCQTTLTSQPSRPVTSLAVHGDLLYAATAHEINVYDRHTCATLQTLNSEGESSGSTKSITFCKEMVFTTHQDCKIRVWQNQRLLTALPTVNDRLRRFLFPNNYVTVRRHEKRLWIEHADAVTGLAVSKVNGVIYSVSWDKTLKVWRVSDLRCLESVKAHEDAVNAVAVSNDGTVYTGSADRKIRVWAKPAGEKRHVPVATLEKHRSAVNALALNDDGSVLFSGACDRSILVWERDDSANHMVVSGALRGHRKAILCLINVSDLLLSGSADRTVRVWKRGCDGQFCCLAVLAGHRKPVKSLAAVQECDQNSKNGAVSVFSGSLDGEIRSWQVSITSLDASDPKLNC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2337 445 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 21 435 IPR045182 -
Dod04g2337 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 377 IPR001680 GO:0005515
Dod04g2337 445 Pfam WD domain, G-beta repeat 251 286 IPR001680 GO:0005515
Dod04g2337 445 Pfam WD domain, G-beta repeat 216 245 IPR001680 GO:0005515
Dod04g2337 445 Pfam WD domain, G-beta repeat 346 377 IPR001680 GO:0005515
Dod04g2337 445 Pfam WD domain, G-beta repeat 385 429 IPR001680 GO:0005515
Dod04g2337 445 Pfam WD domain, G-beta repeat 297 332 IPR001680 GO:0005515
Dod04g2337 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 333 IPR001680 GO:0005515
Dod04g2337 445 Gene3D - 200 291 IPR015943 GO:0005515
Dod04g2337 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 333 - -
Dod04g2337 445 Gene3D - 292 443 IPR015943 GO:0005515
Dod04g2337 445 MobiDBLite consensus disorder prediction 24 71 - -
Dod04g2337 445 PANTHER F21J9.19 21 435 - -
Dod04g2337 445 CDD WD40 113 430 - -
Dod04g2337 445 SMART WD40_4 249 287 IPR001680 GO:0005515
Dod04g2337 445 SMART WD40_4 139 179 IPR001680 GO:0005515
Dod04g2337 445 SMART WD40_4 383 430 IPR001680 GO:0005515
Dod04g2337 445 SMART WD40_4 294 333 IPR001680 GO:0005515
Dod04g2337 445 SMART WD40_4 340 377 IPR001680 GO:0005515
Dod04g2337 445 SMART WD40_4 207 246 IPR001680 GO:0005515
Dod04g2337 445 SMART WD40_4 99 136 IPR001680 GO:0005515
Dod04g2337 445 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Dod04g2337 445 PRINTS G protein beta WD-40 repeat signature 364 378 IPR020472 -
Dod04g2337 445 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Dod04g2337 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 347 377 - -
Dod04g2337 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 255 IPR001680 GO:0005515
Dod04g2337 445 Gene3D - 90 192 IPR015943 GO:0005515
Dod04g2337 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 286 IPR001680 GO:0005515
Dod04g2337 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 286 - -
Dod04g2337 445 SUPERFAMILY WD40 repeat-like 102 431 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2337 Dod-Chr4 47244756 47246862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2337 250 432 Acyl Lipid Metabolism Gene Families AT3G18860 27.679 1.25e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2337 - - gmx:100817776 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2337 04 47244756 47246862 Dod04g2337 04 47244756 47246862 ECH