Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2000 ATGTACACACAGAACTTCAATAGAGTTCATCATACAGTGGGTTCCATACAAAACAAGTTGGATGAAGCTTTGGAGTCTTTAAAAAGACAGGAGAGAAGTGAGGAAAGTATGCTTTTGGAAGCTCAGATTTTGTATCGTCTTGGGAAAATGGATACTTGCTTAGATATCTACAGGACGCTCCAAAAATCCAAGTTTGATAACCTCGAAATAAATTCTGTTGCCAGCCTAGTTATGGGTGGGAGGTCATCTGAAGTTCAAGGAATGCTGGATTCACTTCGGATTAAAGCAACAAGCAGCTTTGAATTGGCATACAATACTGCTTGTTCTTTAATTGAAAGGAACAAGTACACAGATGCAGAGCAACTCTTGTTGTCAGGCCGAAGAATTGGTCAAGAGATCCTGATGGAAGATAACTTGCCTGATGATGAGATAGAACTTGAATTGTCTCCTATAGCTGTACAGTTGGCCTATGTCCAGCAGCTTCTTGGGCGCAAGCAAGAGGCTATTGAAGGTTATACAGACATAATTAAACGAGATATGGCTGATGAAACATCAATTGCAGTGGCAGTGAACAATCTTGTTTCGCTGAGAGGTCCAAAAGATGTTTCTGATAGCCTAAGGAAACTTGATCGGCTAAAGGAGAAAGATACACAAAACTTTCAGCTTGCCCGTGGACTGGACTTGAAACTTCCAGCAAAAGAAAAAGAAGCAATCTATGCAAACAGGGTCCTGTTACTTCTTCATGCCAACAGGATAGACCAGGCCCGTGAACTTGTTTCTGGATTGCCACACATGTTTCCAGAAAGTGTGATACCTGTATTGCTGCAAGCTGCCCTCCTGGTTAGAGAGAACAAAGCTGGAAGGGCTGAGGAGATACTAGCAGAGTTTGCCGGTAAGTTTCCCAAGAAGGCCAAGGTTGTTTACCTGGCCAGGGCTCAGGTGGCTGCTGCTGCTGGCCACCCACATATTGCAGCTGATTCTCTGGCTAAGATATCAGATATCCAACACATGCCTGCTACTGTTGCTACCCTTGTGTCTTTAAAAGAGCGTGCTGGCGACATTGAGGGTGCTGCTGCTGTGCTTGACTCTGCAATCAAATGGTGGTCTAATGCTATGACTGAGGACAATAAGCTTACTATTATAATCCAAGAGGCTGCTTCATTCAACCTCAGGCATGGCAGGGAAGAGGATGCTGCTAGACTCTACGAGGAGCTTGTTAAAAGTCAAGGAGGCATAGAAGCACTGGTTGGGCTGGTAACAACAGTGGCGCGCATGGATGTTGATAAGGCAGAGCTTTATGAAAAGCAACTGAAGACCTTACCTGGTTTAAAGGGAATCGATGTCGACAGCTTGGAGCGAACTTCCGGAGTGAAACAAGTTGATGGTCCTGCTCAGGTTGGGGTTGCTGAAACATCTGAGGAAGGAAAGAATAAGACAAAAGCTAAGAAAAAGAGAAAGAGAAAGCCAAGGTATCCTAAAGGGTTTGACCCTGCAAACCCAGGTCCTCCGCCGGATCCAGAAAGGTGGCTTCCGAGGCGGGAGAGATCGACTTATAGGCCCAAGAGGAAGGACAAAAGAGCTGCTCAAGTGAGAGGCTCTCAGGGTGCTGTAGTTAGAGATAAGCACGATGCTGGTGCCTCTTCCAACAATTCAAATCCAAAATCAAACCAGGCAGCTGCCGCTAAAGGAGCTACACAAAATGCAGCATCTGAGCAAACCAAGCCTTCATCCAAGTCGAGAAAGAAGTCAAGGAATTAA 1758 0.4528 MYTQNFNRVHHTVGSIQNKLDEALESLKRQERSEESMLLEAQILYRLGKMDTCLDIYRTLQKSKFDNLEINSVASLVMGGRSSEVQGMLDSLRIKATSSFELAYNTACSLIERNKYTDAEQLLLSGRRIGQEILMEDNLPDDEIELELSPIAVQLAYVQQLLGRKQEAIEGYTDIIKRDMADETSIAVAVNNLVSLRGPKDVSDSLRKLDRLKEKDTQNFQLARGLDLKLPAKEKEAIYANRVLLLLHANRIDQARELVSGLPHMFPESVIPVLLQAALLVRENKAGRAEEILAEFAGKFPKKAKVVYLARAQVAAAAGHPHIAADSLAKISDIQHMPATVATLVSLKERAGDIEGAAAVLDSAIKWWSNAMTEDNKLTIIIQEAASFNLRHGREEDAARLYEELVKSQGGIEALVGLVTTVARMDVDKAELYEKQLKTLPGLKGIDVDSLERTSGVKQVDGPAQVGVAETSEEGKNKTKAKKKRKRKPRYPKGFDPANPGPPPDPERWLPRRERSTYRPKRKDKRAAQVRGSQGAVVRDKHDAGASSNNSNPKSNQAAAAKGATQNAASEQTKPSSKSRKKSRN* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2000 585 PIRSF SRP72 16 585 IPR026270 GO:0006614
Dod04g2000 585 SUPERFAMILY TPR-like 153 407 IPR011990 GO:0005515
Dod04g2000 585 Coils Coil 13 33 - -
Dod04g2000 585 MobiDBLite consensus disorder prediction 456 585 - -
Dod04g2000 585 Gene3D Tetratricopeptide repeat domain 131 413 IPR011990 GO:0005515
Dod04g2000 585 Pfam SRP72 RNA-binding domain 472 520 IPR013699 GO:0006614|GO:0008312|GO:0048500
Dod04g2000 585 MobiDBLite consensus disorder prediction 544 574 - -
Dod04g2000 585 Gene3D Tetratricopeptide repeat domain 15 86 IPR011990 GO:0005515
Dod04g2000 585 PANTHER SIGNAL RECOGNITION PARTICLE 72 17 583 IPR026270 GO:0006614
Dod04g2000 585 SUPERFAMILY TPR-like 27 179 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2000 Dod-Chr4 43456035 43459111 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2000 K03108 - gmx:100810125 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2000 04 43456035 43459111 Dod04g2000 04 43456035 43459111 ECH