Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1083 ATGCAATTCACGAGATATACAACCACAACGCCAGTGGTCTCAGCTTCGAAGAGCTTTACAGAAATGCATACAATATGGTGCTTCACAAATTTGGTGAGAAGCTGTACTCAGGACTCAGTTGCAACCATGACTGCTCATCTAAAAGACATTGCCAAATCTGTTGAAGCTGCTCAAGGAGGTTCCTTTTTGGAAGAATTGAACAGCAAATGGAATGATCATAATAAGGCATTACAAATGATTAGAGACATACTGATGTACATGGATAGAACTTACATCCCAAGCACCCAGAAGACCCCTGTTCATGAACTTGGGCTGAACCTGTGGAGAGAAATTGTCATTTATTCTAGCCAGATCAGGACTCGGCTGTTGAATACACTTCTGGACTTAATACACAGTGAACGCACTGGCGAAGTTATTGATAGAGGGATAATGAGAAATATAACGACGATGCTAATGGATTTAGGTCCTTCTGTCTATGGGCAGGAATTTGAGACTCATTTTCTTCAAGTTTCAGCTGAGTTCTATCGGGTAGAATCCCAGAAGTTCATTGAGTGTTGTGATTGTGGGGATTATTTGAAGAAAGCTGAGAGGCGTCTGAATGAGGAAATGGATAGAGTAAGCCATTACTTAGATTCCAGGACTGAAAAGAAGATCACTAATGTGGTGGAGAAGGAGATGATTGAAAATCACATGCTAAGATTAATCCACATGGAGAATTCTGGCTTAGTACACATGTTTTGTGATGATAAATATGAAGATTTGGGTAGAATGTATAATTTGTTCCGTCGTGTTCTGGTTGGTCTCTCAAAAATTCGAGAAGTGATGACTGAACACATCAAAGAGTCTGGCAAACAGCTTGTTAATGATCCTGAAAGGTTGAAGGATCCTGTAGAATTTGTGCAGAGGCTGTTAGATGAGAAAGATAAATATGACAAGATTATAAACTTGGCATTTAACAATGACAAATCTTTCCAGAATGCTTTGAATTCCTCATTTGAATATTTCATTAACTTGAATCCCCGATCACCAGAGTTCATTTCACTATTTGTTGATGATAAACTTCGGAAAGGTCTGAAAGGGGTTAGTGAGGATGATGTAGAGGTTACTCTTGACAAGGTGATGATGCTATTCCGATACTTGCAAGAAAAAGATGTTTTTGAGAAGTATTACAAACAGCATCTGGCAAAGAGACTTTTGTCAGGAAAAACAGTTTCTGATGATGCAGAGAGAAGTCTCATAGTTAAGCTCAAGACAGAATGTGGTTACCAATTTACATCGAAATTAGAGGGCATGTTTACAGATATGAGAACCTCCCAGGATACAATGCAGGGCTTTTATGCCAGCCATCCTGAACTAGTTGATGGCCCTACGCTTACTGTCCAGGTTCTGACAACAGGATCTTGGCCAACTCAGTCCAGCATTACATGCAACTTGCCAGCTGAAATGTCTGTACTTTGTGAGAAGTTTCGTTCCTATTACCTTGGCACCCATACTGGCAGGAGGTTGTCCTGGCAAACTAATATGGGCACGGCAGACTTAAAAGCAACCTTTGGGAAGGGTCAGAAGCACGAGCTAAATGTCCCCACTTACCAAATGTGTGTTCTCATGCTGTTTAATAATGCCGATAGACTTAGCTACAAGGAGATTGAGCAAGCAACTGAGATTCCTGCTTCAGATCTTAAGAGATGCCTGCAATCATTGGCTTTAGTTAAGGGAAGAAATGTCCTTAGAAAGGAGCCTATGAGTAAAGATGTCAGTGAGGATGATGCATTCTTTGTTAATGACAAGTTTAGTAGCAAATTGTACAAGGTGAAAATAGGAACTGTTGTTGCACAAAAAGAATCCGAGCCTGAGAAACAGGAAACTCGACAGAGAGTGGAGGAGGACAGGAAGCCCCAGATTGAAGCAGCAGTGGTGAGGATCATGAAATCCAGGAAGCAACTTGATCATAACAATCTTATAGCTGAGGTCACAAAGCAGTTGCAATCGCGATTCCTTGCAAATCCGACAGAGGTAAAGAAACGGATCGAGTCCCTCATTGAACGGGACTTTTTGGAAAGGGATGAAAATGATAGAAAATTGTATCGATATCTTGCCTAG 2100 0.4081 MQFTRYTTTTPVVSASKSFTEMHTIWCFTNLVRSCTQDSVATMTAHLKDIAKSVEAAQGGSFLEELNSKWNDHNKALQMIRDILMYMDRTYIPSTQKTPVHELGLNLWREIVIYSSQIRTRLLNTLLDLIHSERTGEVIDRGIMRNITTMLMDLGPSVYGQEFETHFLQVSAEFYRVESQKFIECCDCGDYLKKAERRLNEEMDRVSHYLDSRTEKKITNVVEKEMIENHMLRLIHMENSGLVHMFCDDKYEDLGRMYNLFRRVLVGLSKIREVMTEHIKESGKQLVNDPERLKDPVEFVQRLLDEKDKYDKIINLAFNNDKSFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEDDVEVTLDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMRTSQDTMQGFYASHPELVDGPTLTVQVLTTGSWPTQSSITCNLPAEMSVLCEKFRSYYLGTHTGRRLSWQTNMGTADLKATFGKGQKHELNVPTYQMCVLMLFNNADRLSYKEIEQATEIPASDLKRCLQSLALVKGRNVLRKEPMSKDVSEDDAFFVNDKFSSKLYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAVVRIMKSRKQLDHNNLIAEVTKQLQSRFLANPTEVKKRIESLIERDFLERDENDRKLYRYLA* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1083 699 SMART Cullin_Nedd8_2 626 693 IPR019559 -
Dod04g1083 699 ProSiteProfiles Cullin family profile. 341 568 IPR016158 -
Dod04g1083 699 PANTHER CULLIN 36 699 IPR045093 -
Dod04g1083 699 Pfam Cullin protein neddylation domain 629 691 IPR019559 -
Dod04g1083 699 Gene3D - 611 699 IPR036388 -
Dod04g1083 699 SUPERFAMILY Cullin homology domain 335 607 IPR036317 -
Dod04g1083 699 Gene3D Cullin Repeats 17 110 - -
Dod04g1083 699 Gene3D Cullin Repeats 232 339 - -
Dod04g1083 699 Gene3D Cullin Repeats 340 451 - -
Dod04g1083 699 Pfam Cullin family 36 597 IPR001373 GO:0006511|GO:0031625
Dod04g1083 699 Coils Coil 192 212 - -
Dod04g1083 699 Gene3D Cullin Repeats 112 231 - -
Dod04g1083 699 SMART cul_2 371 517 IPR016158 -
Dod04g1083 699 PANTHER CULLIN-3A-RELATED 36 699 - -
Dod04g1083 699 Gene3D Cullin; Chain C, Domain 2 455 610 - -
Dod04g1083 699 SUPERFAMILY "Winged helix" DNA-binding domain 610 699 IPR036390 -
Dod04g1083 699 SUPERFAMILY Cullin repeat-like 18 343 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1083 Dod-Chr4 31037696 31041610 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1083 K03869 - gmx:100795098 1250.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1083 04 31037696 31041610 Dod04g1083 04 31037696 31041610 ECH