Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1042 ATGAGGTGTTTGACAAACATTGCAAAGCACCCAACCATTTCACTGGTAAAACCACGCACCACACTCAAAGAGCTGAAGCAAATACACGCTCAGTTGCTCCTTAATGGCGTCCTCCACAACCCCCACTACCACGGCCAATTCGTCGCCACCATAGCGCTCCACAACCCAACAAACCTTAACTATTCCAACCACCTCCTCAACCACCACCACCACAACCTCTTCACCCTCAACTCCATGATCAGGGCCTATTCCAAGAGCCCCACCCCACACAAAAGCTTCATTTTTTACAACAAGATCCTTAACTCCCCCAACAACCTCTCCCCCGACAACTACACCTTCAACTTCATGGTTCGCACGTGCGCACAGCTCCTCGTGTCCCAGGCTGGCTTGTGCGTCCACGCTGCACTCATAAAACACGGATTTGAGCGTGACCGGCACGTGCAAACCGGGTTGATCTTCATGTACGCTGAATTGGGTAGTCTCAGTTCGTGCCACGGAGTGTTCCAGCGGGTTGATAAGCCTGATCTGGTGTGCCAGACCGCTATGGTGCATGCATGCGCCAAATGTGGTGATGTTGACTTTGCGAGGAAGATGTTTGATGTAATGCCCCAGAGAGACCTGATTTCGTGGAACGCTATGATTGCAGGGTACGCCCAATGTGGGAGGTCGAGGGAGGCTTTGGAATTGTTTCATTTGATGCAAGTGGAGGGTGTGGAGCTCAATGAGGTGTCCATGGTTTTGGTGCTGTGTGCGTGTACCCACTTGGGGGCATTGGATCAGGGAAGATGGGCTCATGCGTATGTCGAGAGGAGCAAGCTCAGGATGACGGTGTCATTGGGGACTGCACTCATTGACATGTATGCTAAGTGTGGGGACATTGACAAGGCCATGGAAGTGTTTTGGGGGGTGAAGGAGAAGAATGTTTACACTTGGAGCAGTGCCATTGGTGGGTTGGCCATGAATGGCCTGGGCCATGAGAGTCTGCATCTTTTTTCCCTCATGAAAAATGATGGACTAGTTCAGCCAAACGAAGTAACCTTCATTTCGGTCTTGAGAGGGTGCAGTGTGGTTGGATTGGTGGAGGAAGGTCGAAGGCATTTTGAGACCATGAGGAATTTGTATGGGATTGAGCCTCAGCTTGAGCATTATGGCTTGATGGTTGATTTGTATGGTCGATCAGGGCGTCTTGAGGAAGCTCTAATCTTCATCAATAGCATGCCTATGAAGCCTCACGCTGGTGCATGGAGCGCTTTGCTTCATGCTTGTAGAATGCACAGAAACAAGGAGCTTGGCGAGCTTGCACTGAAAAAAATTGTGGAACTAGAGGCAAAGAATGATGGTGCATATGTCCTTTTATCAAATATATATGCTGATCATAAGAATTGGGAAGGTGTTAGCAGTTTGAGACAGACCATGAAGGCAAGGGGAGTAAAGAAACTCCCTGGTTGTAGTGTCATAGAGGTTGATGGTGAAGTTCATGAGTTCATTGTTGGGGACAAGTCTCACCCTAGATATGATGAGATTGAGTTGAAGCTAGAAGAGGTGTCTAGGTGTCTGAGATTAGCAGGGTATGTGGCCAACACAAACCCTGTGCTTTTTGATATAGAAGAAGAGGAGAAAGAGGGTGTTGTGGGTAGACATAGTGAGAAGGTAGCCATTGCATTTGGGTTAATTAGTTTGAGAGAAGGTGTTCCCATTAGGGTTGTTATGAACCTAAGGATTTGTTGGGATTGCCATGATGCAGCAAAAATGATATCCAAAATTTATGACAGGCAGATTATTGTCAGAGACAGAAACAGGTTTCATCACTTTAAGGATGGTGAATGCTCTTGTAAGGATTCTTGGTGA 1848 0.4773 MRCLTNIAKHPTISLVKPRTTLKELKQIHAQLLLNGVLHNPHYHGQFVATIALHNPTNLNYSNHLLNHHHHNLFTLNSMIRAYSKSPTPHKSFIFYNKILNSPNNLSPDNYTFNFMVRTCAQLLVSQAGLCVHAALIKHGFERDRHVQTGLIFMYAELGSLSSCHGVFQRVDKPDLVCQTAMVHACAKCGDVDFARKMFDVMPQRDLISWNAMIAGYAQCGRSREALELFHLMQVEGVELNEVSMVLVLCACTHLGALDQGRWAHAYVERSKLRMTVSLGTALIDMYAKCGDIDKAMEVFWGVKEKNVYTWSSAIGGLAMNGLGHESLHLFSLMKNDGLVQPNEVTFISVLRGCSVVGLVEEGRRHFETMRNLYGIEPQLEHYGLMVDLYGRSGRLEEALIFINSMPMKPHAGAWSALLHACRMHRNKELGELALKKIVELEAKNDGAYVLLSNIYADHKNWEGVSSLRQTMKARGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIELKLEEVSRCLRLAGYVANTNPVLFDIEEEEKEGVVGRHSEKVAIAFGLISLREGVPIRVVMNLRICWDCHDAAKMISKIYDRQIIVRDRNRFHHFKDGECSCKDSW* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1042 615 Pfam DYW family of nucleic acid deaminases 523 615 IPR032867 GO:0008270
Dod04g1042 615 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Dod04g1042 615 TIGRFAM PPR: pentatricopeptide repeat domain 208 242 IPR002885 -
Dod04g1042 615 TIGRFAM PPR: pentatricopeptide repeat domain 178 206 IPR002885 -
Dod04g1042 615 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 589 - -
Dod04g1042 615 Pfam PPR repeat family 206 252 IPR002885 -
Dod04g1042 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 205 IPR002885 -
Dod04g1042 615 Pfam E+ motif 492 517 IPR046849 -
Dod04g1042 615 Gene3D Tetratricopeptide repeat domain 14 172 IPR011990 GO:0005515
Dod04g1042 615 Gene3D Tetratricopeptide repeat domain 281 502 IPR011990 GO:0005515
Dod04g1042 615 PANTHER OS01G0715700 PROTEIN 17 589 - -
Dod04g1042 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Dod04g1042 615 Pfam PPR repeat 345 371 IPR002885 -
Dod04g1042 615 Pfam PPR repeat 382 407 IPR002885 -
Dod04g1042 615 Pfam PPR repeat 309 339 IPR002885 -
Dod04g1042 615 Pfam PPR repeat 281 307 IPR002885 -
Dod04g1042 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Dod04g1042 615 Pfam E motif 425 487 IPR046848 -
Dod04g1042 615 Gene3D Tetratricopeptide repeat domain 173 277 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1042 Dod-Chr4 30139767 30142078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1042 71 615 Glycoside Hydrolase AT3G49170 35.805 1.11e-110 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1042 - - gmx:100795404 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1042 04 30139767 30142078 Dod04g1042 04 30139767 30142078 ECH