Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1029 ATGGCTCTGGCCATGGCAACAGGCTCACCTCCATTGCTATTCTCCACAGCCACCAACAGCTATAACCACTGCCAACCCTTTATCCATAATAGCCACACACGCCTTATCCACTTGTTGAACGAATCTATTACTATGTCTCAGCTCAAGCAAATTCATGCTCAAATGCTACGCACTATTGACACCAACCATCCACAAGCTCTCTTTCTCCACAGCAGAATTCTTCATCACTCCTCTTTGGCTGACCTTGAATATACCACTAGAGTTTTTTATCAGTTTGGTAACCCCAATTCCTTCATGTGGAACACTCTCATAAGAGCCTATGCAAGAAGCACCAACAAAAAAGACCGGGCCATGGAGCTTTACAAAGCAATGATGATGGAAGAAGAAGAAAGTGCCGCCGTTCCTGATAACCACACATTCCCATTTGTTCTGAAGGCATGTGCTTACATGTTTGCTCTGTGTGAAGGGAAACAGGTGCATGCCCACCTCTTGAAACTTGGGTTTGAGTCAGATACTCATATTTGTAACAGTTTGATTCATTTCTATGCAACATGCGGGTGTCTAGACTTAGCACATAAGATATTCCAAAACATGTCTGAAAGAAGTGAGGTCTCATGGAACATCATGATTGATTCTTATGCAAGGGCCGGACAGTTTGACACTGCATTGAAAATGTTTGGTGAGATGCAGAAAGTTCATGACCCTGATGGTTATACTATGCAAAGTGTTGTTAGTGCCTGTGCTGGTTTGGGAGCTCTGACTGTGGGTTTGTGGGCTCATACTTATGTTTTAAGGAAGTGTGACAAGAACATTGCTGGAGATGTTTTGGTCAACACTTGCTTGGTGGACATGTATTGCAAATGTGGATCAGTGGAATTTGCTCAACAGGTCTTTGAAAGCATGCCTTTTAGGGATGTAAATTCGTGGAATTCAATGATCTTGGGGTTTGCCATGCATGGCATGGCTGAGCAAGCACTGGACTACTATATAAGCATGATGAAGGTAGAGGGAATTGTTCCCAATTCTATCACTTTTGTTGGAGTCTTGAGTGCATGTAATCACAGGGGCATGGTTAGCGAAGGGCTCATGTATTTTGACATAATGACTAAGGAGTACAATATTGAGCCACGGTTGGAGCATTATGGATGTCTTGTTGATCTTTTTGCTCGATCAGGTCACATTGAAGAGGCTATGAACTTGGTTTCCGAAATGCCTATGAAACCAGATGCTGTAATCTGGAGGAGTCTTTTGGATGCTTGTTGCAAGCAACATGCAAGTGTTGAGCTAAGTGAAGAAATGGCCAAGCATGTGTTTGAGTCAGAGGGAAGTGCTTGCAGTGGTTCTTATGTGCTCTTGTCAAAAGTCTATGCTTCAGCTAGCAGGTGGAATGATGTAGGATTGCTTAGAAAACTAATGACTGATAAGGGTGTGACTAAGGAGCCTGGCTGTAGTTTGATTGAGATTGATGGGGTCACCCATGAATTTTTTGCTGGGGACACCACACATCCTCAAAGTAAAGATATATACAAGTTCATGAATGAAATTGAGGAGAAGCTAGAAGCAATACAGTATTCACCTGATTACTCAGGAGCACCATTGGTTGATGAGATTAATGAGGGAAAAAACAGTACTATGAGGTTGCACAGTGAGAGACTGGCCATAGCTTTTGGGCTGTTAAGCTCAAGACCAGGCATGCCAATAAGAGTGTTTAAGAATCTTAGGGTGTGTAATGATTGCCACAGGGTTATCAAATTAATCTCAGGAATTTATAATGTGGAGATAATTGTAAGAGATCGTGCTCGATTCCATCATTTCAAAGAAGGAACCTGTTCTTGTAAGGATTATTGGTGA 1851 0.4236 MALAMATGSPPLLFSTATNSYNHCQPFIHNSHTRLIHLLNESITMSQLKQIHAQMLRTIDTNHPQALFLHSRILHHSSLADLEYTTRVFYQFGNPNSFMWNTLIRAYARSTNKKDRAMELYKAMMMEEEESAAVPDNHTFPFVLKACAYMFALCEGKQVHAHLLKLGFESDTHICNSLIHFYATCGCLDLAHKIFQNMSERSEVSWNIMIDSYARAGQFDTALKMFGEMQKVHDPDGYTMQSVVSACAGLGALTVGLWAHTYVLRKCDKNIAGDVLVNTCLVDMYCKCGSVEFAQQVFESMPFRDVNSWNSMILGFAMHGMAEQALDYYISMMKVEGIVPNSITFVGVLSACNHRGMVSEGLMYFDIMTKEYNIEPRLEHYGCLVDLFARSGHIEEAMNLVSEMPMKPDAVIWRSLLDACCKQHASVELSEEMAKHVFESEGSACSGSYVLLSKVYASASRWNDVGLLRKLMTDKGVTKEPGCSLIEIDGVTHEFFAGDTTHPQSKDIYKFMNEIEEKLEAIQYSPDYSGAPLVDEINEGKNSTMRLHSERLAIAFGLLSSRPGMPIRVFKNLRVCNDCHRVIKLISGIYNVEIIVRDRARFHHFKEGTCSCKDYW* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1029 616 Pfam PPR repeat family 202 248 IPR002885 -
Dod04g1029 616 Pfam PPR repeat family 305 352 IPR002885 -
Dod04g1029 616 Pfam E motif 424 487 IPR046848 -
Dod04g1029 616 Pfam DYW family of nucleic acid deaminases 538 616 IPR032867 GO:0008270
Dod04g1029 616 PANTHER OS01G0913400 PROTEIN-RELATED 26 558 - -
Dod04g1029 616 TIGRFAM PPR: pentatricopeptide repeat domain 204 231 IPR002885 -
Dod04g1029 616 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Dod04g1029 616 TIGRFAM PPR: pentatricopeptide repeat domain 174 202 IPR002885 -
Dod04g1029 616 Pfam E+ motif 492 515 IPR046849 -
Dod04g1029 616 Gene3D Tetratricopeptide repeat domain 31 153 IPR011990 GO:0005515
Dod04g1029 616 Gene3D Tetratricopeptide repeat domain 154 254 IPR011990 GO:0005515
Dod04g1029 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 131 IPR002885 -
Dod04g1029 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 201 IPR002885 -
Dod04g1029 616 PANTHER BNAC04G18690D PROTEIN 26 558 - -
Dod04g1029 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 232 IPR002885 -
Dod04g1029 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 340 IPR002885 -
Dod04g1029 616 Pfam PPR repeat 279 302 IPR002885 -
Dod04g1029 616 Pfam PPR repeat 175 201 IPR002885 -
Dod04g1029 616 Pfam PPR repeat 380 405 IPR002885 -
Dod04g1029 616 Pfam PPR repeat 98 125 IPR002885 -
Dod04g1029 616 Gene3D Tetratricopeptide repeat domain 333 494 IPR011990 GO:0005515
Dod04g1029 616 Gene3D Tetratricopeptide repeat domain 261 332 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1029 Dod-Chr4 29850615 29852767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1029 45 616 Glycoside Hydrolase AT3G49170 34.256 5.55e-119 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1029 - - lang:109338282 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1029 04 29850615 29852767 Dod04g1029 04 29850615 29852767 ECH