Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1003 ATGGCTCTGTCGCGCTTGGCTTCCACGCGTTCCGGATCCAATCTCCTGAACCCGATCTCACCATTCTTCCCCTGCGCCCCCTCCATCCTCCGCCGCTCGATCTCCACATCCAACGACTCCATCACCGTTGAGACCTCCGTCCCCTTCACGGCCCACAACTGCGACACCCCGTCCCGCTCCGTCGACACCTCCGCCGCCGAGCTCCTCTCCTTCTTCCGCGACATGGCCCTCATGCGCCGCATGGAGATCGCCGCCGACTCCCTCTACAAGGCCAAGCTCATCCGCGGTTTCTGCCACCTCTACGACGGCCAGGAGGCCGTCGCCGTCGGCATGGACTCCGCCATCACCAAGAAGGACTGCATCATCACCGCGTACCGCGACCACTGCATCTTCCTCAGCCGCGGCGGAGCCCTAGTCGAGGTCTTCGCCGAGCTCATGGGCCGCCGCGCCGGGTGCTCCAACGGGAAGGGCGGATCCATGCACTTCTACCGGAAAAAGGACGGGTTTTACGGCGGTCACGGCATTGTCGGAGCTCAGGTTCCACTGGGTTGTGGATTGGCTTTTGCTCAGAAATACTCTAAGGATGAGAATGTAACTTTCGCTATGTATGGTGATGGTGCTGCTAACCAGGGACAGTTGTTTGAGGCGCTTAACATTGCTGCGCTTTGGGATTTGCCTGCAATTTTGGTCTGCGAGAATAATCATTATGGGATGGGTACTGCTGAGTGGAGAGCTGCCAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTTCCTGGATTGAAGGTAGATGGTATGGATGCTCTTGCCGTGAAACAGGCTTGCAAATTTGCTAAGGATCATGCTTTGAAGAATGGACCCATTATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTGGCAGCACATACCGTACACGTGATGAGATTAGTGGTGTGCGACAGGAGCGTGATCCGATAGAGAGAATAAGGAAGTTGTTATTGTCTCATGATATTGCTGCTGAGAAGGAGCTAAAGGACATGGAAAAGGAAATCAGAAAAGAAGTTGACGATGCCATTGCCAAAGCAAAGGAGAGTGAAATGCCGGATCCATCTGAACTGTTCACCAACGTGTATGTTAAAGGTTTAGGGGTTGAGGCATGTGGAGCTGACAGGAAAGAAGTTAGAGCTACTTTGCCATAA 1197 0.538 MALSRLASTRSGSNLLNPISPFFPCAPSILRRSISTSNDSITVETSVPFTAHNCDTPSRSVDTSAAELLSFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMDSAITKKDCIITAYRDHCIFLSRGGALVEVFAELMGRRAGCSNGKGGSMHFYRKKDGFYGGHGIVGAQVPLGCGLAFAQKYSKDENVTFAMYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDALAVKQACKFAKDHALKNGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLLLSHDIAAEKELKDMEKEIRKEVDDAIAKAKESEMPDPSELFTNVYVKGLGVEACGADRKEVRATLP* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1003 398 Pfam Dehydrogenase E1 component 74 369 IPR001017 GO:0016624
Dod04g1003 398 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 10 398 - -
Dod04g1003 398 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 67 378 IPR017597 GO:0004739|GO:0006086|GO:0043231
Dod04g1003 398 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, MITOCHONDRIAL 10 398 - -
Dod04g1003 398 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 58 379 IPR029061 -
Dod04g1003 398 CDD TPP_E1_PDC_ADC_BCADC 71 361 - -
Dod04g1003 398 MobiDBLite consensus disorder prediction 301 320 - -
Dod04g1003 398 Coils Coil 340 360 - -
Dod04g1003 398 Gene3D - 27 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1003 Dod-Chr4 29183184 29188421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1003 1 398 Acyl Lipid Metabolism Gene Families AT1G24180 79.899 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1003 K00161 - gmx:100813933 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1003 04 29183184 29188421 Dod04g1003 04 29183184 29188421 ECH