Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0742 ATGGGGAAGAAAGTCAGAAAGAAAAGCCGAAGTTCTGCTAAGGAGAAGGGGCTTGCTACCCAGTCCCCTAAAAAGGTTACAGAATCTTGCAACCCAACTGTTGAGTCTCGTGATGAGGGGGTTTTGGCTGCAAAAGAGACAAATTCTTGCCCTCATATTGTAAAAGGTATTAATTTAAATAGATTGTCTACTAAGGTTGGGTCTTCTGGATCGTTAAGGTGTGAAGATTGTAGGGAAGGTGCAGCTGATAGAAGGGGTGGTAAAGGAAAATCTAAACATGGGAAGAAGAAAGGTGGTGCATCATTAGATTCAAAATCCGAGTCAAAGGCTATATGGGTTTGTTTGGAGTGTGGTCAATATACCTGTGGAGGTGTGGGGCTACCGATAACCCCTCATTGCCATGTTGTCAGGCATGTGAGGCAAAACCGGCACCCCTTGGTGGTTAATTTTGAAAAACCTCAGCTGTGTTGGTGTTTTCCTTGCAATATGCTCATTCAAGTTGATAAAATAGAGGAGACTGAAGAAACGGCTACTCTTCTGTCTGATGTGGTGAAATTGTTGAAAGGACGATCATCAGAAAAATCATCAGGAGACATTGAAGATGTTGGCTTAGCAGATGGCAGTGTTACTTCCGAAATCAAATCAGAAACTCTTTCCAGAAGTGATTCATATGGACATGGCGGTTATGCAGTTAGAGGCATGGTTAATCTTGGGAATACTTGCTTTTTCAATTCAATCGTGCAAAATTTGCTTGCTATGAGCAGATTGCGGGACAACTTTCTGAGTTTTGATGCTCCTGTTGGGCCACTGATTAGTTCCTTGAAGAAGCTGTTCAGTGAAACAAACCCAGAATCAGGATTGAAAAATGTTATAAATCCTAGGTCCTTTTATGGTTGTGTATGTTCCAAGTCTCCTCAATTTCGAGGATATCAACAGCATGACAGTCATGAATTGCTCCGTTGTTTGCTGGATGGGTTGAGTACTGAAGAACTAGCTGCAAGGAAACAGAATGGTTCTGCTAAAAGAGATGAGACCTCTTCTAATACTTTAGTTGATGATTTATTTGGGGGTCAGATATCTAGTACTGTATGTTGCATTGAATGTGGACATTTCTCAACAGTGTATGAGCCTTTTTTGGATCTTTCCCTGCCAGTTCCAACTAAGAAACCTCCCCCCCGGAAAGCACAACAAGTAACTCGAACCAAAAAAGCAAAACTTCCACCAAAAAAAGCTGGAAAGACTCGAGTCAAAGTTAACAGGGATGCTGATGCATTAGCAGCCAATCATAGTATATCAAACCAATTATCCATCCGTGAATCATCCTGCCCTGCTCAGCCCAACATATCAGTTGCTGGAGAAATGGCAGCTCCATCTGGTGATTCTACAGGATGGGGTTCTGAAGAAATAAGCACTGTCACTGATAAAGAAGACTCGTCTTCACCTAATTTGGTAACTGTTGGAGAGTCTCAACATATGCCCATGCTTGACAATGATGCAAACAAAATGCCAGCTTCATCAGATGATTTTGCGTGGTTGGATTATGTGGAAGCAGGACCTGTGACAGATGAATGTGATTTCCTTTCCCAGAAGGAGGATGCCCCAGAGGTACGGGATCCTGAGAGCATGGATGAATGCTTAACTGAATTGCCTGTGCAGGCTAGCTGTGAATCTAATGGTCCAGTTTGTTTCCTTAAGGAGGATCAAAATCCAAGACCAGATTCTTCTTCAACGATTGGGTGGGAAGATGAGGTTCCATTACAAGTTCAAGGTTCCGAGGTGTTGTTACTTCCTTACAAAGAAGAAAGTTCCTATACTGGTGAGATCATTGGAAGAGATGGCGAGACCTCCTCATCAAATTTGGCCGGTGGGCGAGAGGAAGAGGACTTTGATGGCTTTGGTGACTTATTCAATGAGCCTGAAGTTGTTGCTGGTCCTGCTCCTAGACCTTCACCTAGTGAGGTCGTGGAAGCTGGTTTTGTTGTTGGAAACAACAGTGAGTCTGAACCAGATGAAGTAGATGATACCGATTCTCCTGTCTCTATAGAGAGTTGCTTGGCACATTTTATAAAACCTGAGCTTCTTTCAGATGAAAATGCTTGGAACTGTGAGAACTGTTTAAAAATTTTCCGACGTCAAAAGATAGAAGCAGAAAAGAAGGCAAAATCTGTATTGGATGGAACTGAGACTGGATGCCATGTTGAAACAGGGCATGCGGATGACTCTTCTTCTGTTAAAGTCAGAAGTCTTGGTAATGGGGATATTACAAATGACAAAAATATAGAAAGTTCAGTTTCACATGTTAAACATGGAACAGAGCTTGAAAATGGTCAAACAATTGACTTGAGTTCAATTGTTAATGAAAAGGATCTTGGGACATCTAAGATGAAAGATACGCATAATGAGGAGCTTCAGTCCTCAAGTTTTCATAGAGTTTGCAATGAAGAAAGTCACAATCATTCAGCTGCTGATTCTTGTGTTACTTTGGAGACGACTGAAAATGTCCAAAGAAGAGATCCTCAGATGTTAGGTCATGATAACAATGAATCAGAAGAATGTAGCGAGGAAGAGGCTGACTCCAAAAGTTTGAAAGTGAACAGGGATGCAACTAAGAAGGTCCTCATTTATAAAGCTCCGCCTGTCTTGACAATTCATCTGAAGAGATTCAGCCAAGATGCCCGTGGCCGCATAAGCAAATTAAATGGTCATGTCAATTTCAGAGAAACAATGGATCTCAGACCATATATGGATCCCAGATGCATAATTGAAGAGAAGTATGAATACCACTTGATTGGTGTAGTGGAGCACTCAGGAACTATGAGAGGAGGTCATTATGTTGCATATGTGAGAGGAGGGCATAGGAACAGAGGGAAAATTGATAAAGGGAACGAGAGTTCTACATGGTATCATGCCAGTGATACATATGTGCGGGAAGTTTCTCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTATGAAAAAATTTGA 2991 0.4173 MGKKVRKKSRSSAKEKGLATQSPKKVTESCNPTVESRDEGVLAAKETNSCPHIVKGINLNRLSTKVGSSGSLRCEDCREGAADRRGGKGKSKHGKKKGGASLDSKSESKAIWVCLECGQYTCGGVGLPITPHCHVVRHVRQNRHPLVVNFEKPQLCWCFPCNMLIQVDKIEETEETATLLSDVVKLLKGRSSEKSSGDIEDVGLADGSVTSEIKSETLSRSDSYGHGGYAVRGMVNLGNTCFFNSIVQNLLAMSRLRDNFLSFDAPVGPLISSLKKLFSETNPESGLKNVINPRSFYGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAARKQNGSAKRDETSSNTLVDDLFGGQISSTVCCIECGHFSTVYEPFLDLSLPVPTKKPPPRKAQQVTRTKKAKLPPKKAGKTRVKVNRDADALAANHSISNQLSIRESSCPAQPNISVAGEMAAPSGDSTGWGSEEISTVTDKEDSSSPNLVTVGESQHMPMLDNDANKMPASSDDFAWLDYVEAGPVTDECDFLSQKEDAPEVRDPESMDECLTELPVQASCESNGPVCFLKEDQNPRPDSSSTIGWEDEVPLQVQGSEVLLLPYKEESSYTGEIIGRDGETSSSNLAGGREEEDFDGFGDLFNEPEVVAGPAPRPSPSEVVEAGFVVGNNSESEPDEVDDTDSPVSIESCLAHFIKPELLSDENAWNCENCLKIFRRQKIEAEKKAKSVLDGTETGCHVETGHADDSSSVKVRSLGNGDITNDKNIESSVSHVKHGTELENGQTIDLSSIVNEKDLGTSKMKDTHNEELQSSSFHRVCNEESHNHSAADSCVTLETTENVQRRDPQMLGHDNNESEECSEEEADSKSLKVNRDATKKVLIYKAPPVLTIHLKRFSQDARGRISKLNGHVNFRETMDLRPYMDPRCIIEEKYEYHLIGVVEHSGTMRGGHYVAYVRGGHRNRGKIDKGNESSTWYHASDTYVREVSLDEVLRCEAYILFYEKI* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0742 996 Gene3D Cysteine proteinases 651 724 - -
Dod04g0742 996 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 233 248 IPR018200 GO:0004843|GO:0006511
Dod04g0742 996 ProSiteProfiles Zinc finger UBP-type profile. 48 184 IPR001607 GO:0008270
Dod04g0742 996 MobiDBLite consensus disorder prediction 1 42 - -
Dod04g0742 996 SMART Zf_UBP_1 102 155 IPR001607 GO:0008270
Dod04g0742 996 MobiDBLite consensus disorder prediction 385 416 - -
Dod04g0742 996 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 232 996 IPR028889 -
Dod04g0742 996 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 995 - -
Dod04g0742 996 MobiDBLite consensus disorder prediction 395 413 - -
Dod04g0742 996 MobiDBLite consensus disorder prediction 15 34 - -
Dod04g0742 996 MobiDBLite consensus disorder prediction 454 481 - -
Dod04g0742 996 MobiDBLite consensus disorder prediction 81 102 - -
Dod04g0742 996 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 927 944 IPR018200 GO:0004843|GO:0006511
Dod04g0742 996 MobiDBLite consensus disorder prediction 796 863 - -
Dod04g0742 996 Pfam Zn-finger in ubiquitin-hydrolases and other protein 74 167 IPR001607 GO:0008270
Dod04g0742 996 SUPERFAMILY RING/U-box 49 166 - -
Dod04g0742 996 CDD Peptidase_C19K 868 994 - -
Dod04g0742 996 SUPERFAMILY Cysteine proteinases 231 995 IPR038765 -
Dod04g0742 996 Pfam Ubiquitin carboxyl-terminal hydrolase 233 993 IPR001394 GO:0004843|GO:0016579
Dod04g0742 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 184 IPR013083 -
Dod04g0742 996 Gene3D Cysteine proteinases 734 996 - -
Dod04g0742 996 MobiDBLite consensus disorder prediction 463 481 - -
Dod04g0742 996 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 995 - -
Dod04g0742 996 MobiDBLite consensus disorder prediction 818 837 - -
Dod04g0742 996 Gene3D Cysteine proteinases 214 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0742 Dod-Chr4 12810856 12815137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0742 868 996 Miscellaneous Gene Families AT2G24640 37.121 1.96e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0742 K11844 - gmx:100780952 1493.79