Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0734 ATGAGTATGTCATTTTCCTTGGCACCAAAGCCTTCGATCACTGAGAGCAATAGGAGAGCATTTTGTACAAGATTTGCCGTTATAAGGTCTGAAGTAATTACTGTGGCTCCCAAACAAAGAAGAGCTAGCAGTGAGCTTCCCCAGTTGTCAAAACAAGGCGTCCCTCTTGCTGATTTACATGTACAAGAGGTTGTTGAGAGGCAGTCTCAGAGTGCTAATTTTGCCGCTGTAAGTTCTTTTAGCAAGCCGCGGTTTGAGCCCCGTTTTCTTAAGGATGCATATGAAATGTGCAGACAGATCTGTGCCGAATATGCCAAGACCTTCTATCTAGGAACTTTGCTTATGACAGAACAAAGACAGAAGGCTATATGGGCAATATATGTTTGGTGCAGGAGGACGGATGAACTTGTTGACGGTCCTAATGCTGCCTATATGAGCTCTTCTGTTCTTGATAGGTGGGAAGAGAGATTGCATGACATTTTCCATGGACGCCCCTATGATATGCTTGATGCTGCTCTTGCTGATACAGTCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGGGACATGATAGAAGGTATGAGGATGGATACAAGGAAGACTAGATACAAAAATTTCCAAGAGTTATATCTTTACTGCTACTACGTAGCTGGAACTGTTGGCTTAATGAGCGTTCCAATAATGGGCATTGCCCCGGAATCCATCATCCCTGCTCAAAGTGTATATAATGCAGCACTATATCTGGGAATTGGAAATCAATTGACAAACATTCTTAGAGATGTGGGAGAGGATGCATTAAGAGGTAGAGTCTACCTTCCCCAAGATGAACTGGCCCAGTTTGGCTTGTGTGAAATGGATATCTTCTCTAGAAAGGTCACTGAAAGATGGAGAGAGTTTATGAGACAGCAGATTACAAGGGCAAGGTTCTACTTCAACTTGTCAGAAGAAGGAGCTTCTCAGCTTGATAAGGCCAGCCGATGGCCGGTGTGGTCCTCATTAGTCCTGTATCGTAAGATCTTGGATGCAATTGAAGACAACGATTACGACAACTTCACAAAACGAGCCTACGTAGGACGAACTAAGAAGCTTCTGATGTTGCCTGTAGCTTACACTAGATCTCTCTCAAGTCCCAACACGAAATTCGGCCCTTCGTTAACAAGGCAAATCTAG 1170 0.4376 MSMSFSLAPKPSITESNRRAFCTRFAVIRSEVITVAPKQRRASSELPQLSKQGVPLADLHVQEVVERQSQSANFAAVSSFSKPRFEPRFLKDAYEMCRQICAEYAKTFYLGTLLMTEQRQKAIWAIYVWCRRTDELVDGPNAAYMSSSVLDRWEERLHDIFHGRPYDMLDAALADTVSKFPLDIKPFRDMIEGMRMDTRKTRYKNFQELYLYCYYVAGTVGLMSVPIMGIAPESIIPAQSVYNAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCEMDIFSRKVTERWREFMRQQITRARFYFNLSEEGASQLDKASRWPVWSSLVLYRKILDAIEDNDYDNFTKRAYVGRTKKLLMLPVAYTRSLSSPNTKFGPSLTRQI* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0734 389 CDD Trans_IPPS_HH 95 362 IPR033904 GO:0004311
Dod04g0734 389 ProSitePatterns Squalene and phytoene synthases signature 1. 212 227 IPR019845 GO:0016765
Dod04g0734 389 SFLD Squalene/Phytoene Synthase Like 91 372 IPR002060 GO:0009058
Dod04g0734 389 ProSitePatterns Squalene and phytoene synthases signature 2. 248 273 IPR019845 GO:0016765
Dod04g0734 389 SFLD Phytoene synthase like 91 372 IPR044843 GO:0004311
Dod04g0734 389 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 2 380 - -
Dod04g0734 389 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 2 380 - -
Dod04g0734 389 Gene3D Farnesyl Diphosphate Synthase 87 370 IPR008949 -
Dod04g0734 389 SUPERFAMILY Terpenoid synthases 92 374 IPR008949 -
Dod04g0734 389 Pfam Squalene/phytoene synthase 104 359 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0734 Dod-Chr4 12212006 12218844 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0734 K02291 - gmx:100782394 596.275