Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0724 ATGGATTTCGTTGAACTGGAGGCCGCTGAAGGCCTCCGCTGGTCATGGAACTCATGGCCAACATCGAAATCGGAATCATCATCCCTCATGATCCCACTCTCCGTCATGTGCACTCCCTTAATGCAACCCTCCGAGCTCCCCATCGTTCCCTGCGACCCACTCCTCTGCTCCCGATGCGCCGCCGTTCTGAACCCCTACGCCCGCCTCGACTACCAGTCGCGCATCTGGCACTGCCCCTTCTGCTCTCAACGCAACCCTTTCCCTCGCTCTTACTCCGAAATCGCCGATACCAACCTCCCCGCTAAGCTCTTCCCTACCTACAGCTCCGTCGATGGCGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGATCTGCGTGCGGCTGGGCCTGCTTTTGTGTTTGTTGTGGATCTCTCGTCTGCGGAGGAGGAACTCAGGGCGCTTAAGAATGAGCTGCTGCTGGTGATGGAACAGTTGCCGGAGAACACTCTTGTGGGATTGGTTTCCTTTGATTCGATGGTGTATGTGCATGATCTCGGGCATTCTGAGTGTTCCAAGGTTGTCGTGTTCCATGGGGACCGTGAAGTTTCCTCTGATCAGGCCCGACAGTTCCTAAACATTAGCCACACACACCAGCTGCATCTTGGACAGATGCCTGTTGTCCCCAGGCAGGGATATCTGTTGCCAATTTCGGAATGCGAGTTCAGCATCACCTTTGCAATTGAAGAGATCCATTGTACGTGGAAGTTCACTTCGGGGAGGCGCCCTCTAAGGTCCACGGGGGCCGCAATATCAGCTGCCCTTGGACTTTTAGAGGGTTGCCTTATAAACACAGGGTCAAGGATCATGGTCTTCACATCTGGACCTGCTACACTAGGACCAAGCATGGTTGTGGACTCTGATCTCGGCCAAGCCATGAGAACCCACCAGCACATCATGAATGGGCAAGCAAGACACCATGAAAAGTCTTGTAGTTTCTACAAGCAGGTGTCCAAGAGGCTATCTGATGCATCTATTGTTCTTGATCTGTTTGCTTGCTCCCTTGACCAAGTAGGAGCAGCTGAGCTACGAGAACCCATTGAACGCTCAGGTGGATTTATGATTCTTGCTGAGACTTTTGAATCAGATCAATTCAGGAAATGTCTCAGGCACTTATTTAAACGTGACGATGATGGCTATTTGAAGATGAATTTTGATGCAACTGTTGAAGTAGTGACCACTAAAGATGTGAAAATATGTGGAGCTCTTGGTCCTTGTGTTTCTCTTAGAAAAAGGAACAGTTTAGTAAGTGAGGCTGAGGTTGGAGAAGGGGGTACCTGTATGTGGAAGTTAAATACACTCACTCACAAAACTTGCATTGCTTTTTTCTTCCAAGTGAATGATGAACACAAGATACAACCCGGGTCTGCATTTTTAATTCAGTTTGTTACCCGATACCGGCAAGGGAACTTGGGAGTCCGAAAACGGGTGACCACTGCTGCAAGACGATGGGTTGGGAACTATTCCACAGATATTGCTGCTGGGTTTGATCAAGAAGCTGCAGCTTCGGTTATGGCAAGACTTGCTATTCTCCGAGCAGAGACATGCTATGCCCGTGATGTCATTAGATGGCTAGATGACACACTTATCCGTTTTGCTTCCACGTTTGGGGATTATATGCCAGAAGATCCTTCTTCCTTCCGCCTTTCCTCCAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTAAGGCGATCTCAGTTTATTGATGTCTGTAACACTACTCCTGATGAAACTGCTTTTTTCCGGCTAATGCTAAACCATGAGGGAGTTGTAGGCTCTCTTATAATGATTCAACCGACACTTTTCCAATACTCATTTGATGGGCCACCTGTTCCAGTACTTCTAGATATTCGCTCCATTTCTCCGGATGTTATCCTGCTCTTTGATTCCTACTTCCTTGTGGTAATTCATTATGGGTCCAAGATTGCTCAGTGGAGGAAGCTTGGTTATGATAGGGACCCAAATCATGAGAACTTTAGAAAGCTGTTGGAAGCTCCAGAACTGGATGCACAACAATTGGTGACGGATCGGATTCCAGCACCAAAGATTGTTAGATGTGACCAACATAGTAGTCAGGCAAGGTTTCTTCTTGCCAAGTTGAATCCATCCGTAACTCAAAATTCAACATATACAGATGGGTCAGATATCGTCTTTACCGATGACTTGAGCTTGCAAGTTTTTTTAGATCACTTGCAGGAACTGGCAGTGCAAGGGTGA 2256 0.4805 MDFVELEAAEGLRWSWNSWPTSKSESSSLMIPLSVMCTPLMQPSELPIVPCDPLLCSRCAAVLNPYARLDYQSRIWHCPFCSQRNPFPRSYSEIADTNLPAKLFPTYSSVDGGSGGGGGGGGDLRAAGPAFVFVVDLSSAEEELRALKNELLLVMEQLPENTLVGLVSFDSMVYVHDLGHSECSKVVVFHGDREVSSDQARQFLNISHTHQLHLGQMPVVPRQGYLLPISECEFSITFAIEEIHCTWKFTSGRRPLRSTGAAISAALGLLEGCLINTGSRIMVFTSGPATLGPSMVVDSDLGQAMRTHQHIMNGQARHHEKSCSFYKQVSKRLSDASIVLDLFACSLDQVGAAELREPIERSGGFMILAETFESDQFRKCLRHLFKRDDDGYLKMNFDATVEVVTTKDVKICGALGPCVSLRKRNSLVSEAEVGEGGTCMWKLNTLTHKTCIAFFFQVNDEHKIQPGSAFLIQFVTRYRQGNLGVRKRVTTAARRWVGNYSTDIAAGFDQEAAASVMARLAILRAETCYARDVIRWLDDTLIRFASTFGDYMPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLMLNHEGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDVILLFDSYFLVVIHYGSKIAQWRKLGYDRDPNHENFRKLLEAPELDAQQLVTDRIPAPKIVRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIVFTDDLSLQVFLDHLQELAVQG* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0724 751 Gene3D Severin 611 715 IPR029006 -
Dod04g0724 751 SUPERFAMILY beta-sandwich domain of Sec23/24 2 508 - -
Dod04g0724 751 Pfam Sec23/Sec24 beta-sandwich domain 397 497 IPR012990 -
Dod04g0724 751 Gene3D - 50 109 - -
Dod04g0724 751 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 612 750 IPR036180 -
Dod04g0724 751 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 751 IPR037364 -
Dod04g0724 751 Pfam Sec23/Sec24 helical domain 509 605 IPR006900 GO:0006886|GO:0006888|GO:0030127
Dod04g0724 751 Pfam Sec23/Sec24 trunk domain 129 387 IPR006896 GO:0006886|GO:0006888|GO:0030127
Dod04g0724 751 CDD Sec23_C 601 721 IPR037550 GO:0030127|GO:0090114
Dod04g0724 751 Pfam Gelsolin repeat 623 709 IPR007123 -
Dod04g0724 751 Pfam Sec23/Sec24 zinc finger 53 91 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Dod04g0724 751 SUPERFAMILY Zn-finger domain of Sec23/24 46 111 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Dod04g0724 751 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 751 - -
Dod04g0724 751 Gene3D Sec23/Sec24 helical domain 506 748 - -
Dod04g0724 751 Gene3D von Willebrand factor, type A domain 128 395 IPR036465 -
Dod04g0724 751 SUPERFAMILY Helical domain of Sec23/24 509 611 IPR036175 GO:0006886|GO:0006888|GO:0030127
Dod04g0724 751 SUPERFAMILY vWA-like 129 387 IPR036465 -
Dod04g0724 751 Gene3D - 6 494 - -
Dod04g0724 751 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0724 Dod-Chr4 11857702 11860935 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0724 K14006 - qsu:112032200 1183.7