Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0717 ATGACTCAAAATCAACAACAACCAATTCCAGAAACAGACAAAAAAATGGAAAAAAAAAGCCCTAAAGTTCAAATAGTGAAGAAGCGTGTGCCCGAGTGGCTCAACAGCTCTATGTGGTCCACCCCAACTCCCCACTCCGACAACCTCCGCTTCTCCGCCGCCACCTACCCGCCGGAACCACCGTCTCCTCCGTCCCCTCCCTCTCCTCCTCCCCCTCCTCCTCCGCCATCTATCACTGTCCCACAAGATCCTTCGAGCCTAGACTCCCGAACTACTCACAACGGCACCGCAACCTCTTCTTCTTCCCCGCCCTCCCCTTCCCCAGACGACGTCTCTCGCCATTCTCAATTGTTGACCGAGTTATCTAAGAAGGTTATTGACATGCGGGAATTGAGGAGAATTGCGTGTGAAGGTATACCTGATGCTCCAAGTGTACGGTCTGTGGTCTGGAAGCTTTTGCTTGGATACCTACCGACTGATCGCACCCTCTGGCCGTCGGAGTTGGCAAAGAAGAGGTCCCAATACAAGCATTTCAAAGAGGATGTTCTCGTGAATCCTTCAGAAATCACAAGGAGGATGTATTACTCCAATTCCACAAGTTATGACACCGATGATGCTAAGTGTGAGAGTAGATGCTTGCTTTCTAGATCAGAAATCACTCATGGCGAGCACCCTTTAAGTCTTGGCAAAACCAGCATATGGAATCAGTTCTTCCAGGACAGTGAGATCATAGATCAGATTGACCGAGATGTAAAGCGCACACATCCAGATATGCACTTTTTCTCTGGTGATTCTCAATTTGCAAAATCTAATCAGGAGTCTTTAAGGAACATACTAATTATTTTTGCAAAGTTGAACCCGGGTATAAGATATGTTCAAGGGATGAATGAGGTATTGGCTCCTCTGTTCTATGTGTTCAAAAATGACCCTGATGAGGAGAATGCGGCCTTTGCTGAAGCAGATACATTTTTTTGTTTCGTTGAGCTATTAGGCGGGTTCCGAGACAATTTTTGTCAACAACTTGACAATAGTGTTGTTGGAATCCGGTCCACTATTACAAGATTGTCCCAGCTTTTGAAAGAACATGATGAAGAACTGTGGCGTCATCTTGAGGTCACGACTAAAGTCAATCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAGGAATTCAATTTTGCTGACAGCCTTCATATTTGGGACACTCTTCTAAGTGATCCAGAGGGTCCACAGGAGACTCTTCTGCGGATATGCTGTGCAATGTTAATTCTCATTCGTAGGCGCCTCCTAGCAGGTGATTTCACTTCTAATCTCAAGTTACTACAACATTATCCTTCTACAAACATTAGTCATTTGCTCTATGTTGCCAATAAGTTACGTGTACAGTCAGTTTAA 1404 0.453 MTQNQQQPIPETDKKMEKKSPKVQIVKKRVPEWLNSSMWSTPTPHSDNLRFSAATYPPEPPSPPSPPSPPPPPPPPSITVPQDPSSLDSRTTHNGTATSSSSPPSPSPDDVSRHSQLLTELSKKVIDMRELRRIACEGIPDAPSVRSVVWKLLLGYLPTDRTLWPSELAKKRSQYKHFKEDVLVNPSEITRRMYYSNSTSYDTDDAKCESRCLLSRSEITHGEHPLSLGKTSIWNQFFQDSEIIDQIDRDVKRTHPDMHFFSGDSQFAKSNQESLRNILIIFAKLNPGIRYVQGMNEVLAPLFYVFKNDPDEENAAFAEADTFFCFVELLGGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTLLSDPEGPQETLLRICCAMLILIRRRLLAGDFTSNLKLLQHYPSTNISHLLYVANKLRVQSV* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0717 467 Gene3D - 346 466 - -
Dod04g0717 467 SMART tbc_4 135 436 IPR000195 -
Dod04g0717 467 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 27 465 - -
Dod04g0717 467 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 119 369 IPR035969 -
Dod04g0717 467 MobiDBLite consensus disorder prediction 1 115 - -
Dod04g0717 467 MobiDBLite consensus disorder prediction 34 50 - -
Dod04g0717 467 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 229 337 - -
Dod04g0717 467 Pfam Rab-GTPase-TBC domain 239 432 IPR000195 -
Dod04g0717 467 Gene3D - 109 163 - -
Dod04g0717 467 MobiDBLite consensus disorder prediction 82 115 - -
Dod04g0717 467 MobiDBLite consensus disorder prediction 11 26 - -
Dod04g0717 467 SUPERFAMILY Formin homology 2 domain (FH2 domain) 66 76 - -
Dod04g0717 467 MobiDBLite consensus disorder prediction 56 81 - -
Dod04g0717 467 ProSiteProfiles TBC/rab GAP domain profile. 140 410 IPR000195 -
Dod04g0717 467 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 27 465 - -
Dod04g0717 467 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 347 464 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0717 Dod-Chr4 11612706 11622813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0717 K24796 - mnt:21404479 664.455