Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0700 ATGAGTACCGTTGATAAGATGCTGATAAAAGGCATCCGGAGCTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAGGCCCTTAACCCTAATCGTTGGCCCCAACGGTGCTGGCAAAACCACAATCATAGAGTGCTTGAAGCTTTCCTGCACTGGTGAGTTGCCTCCTAATGCCAGGTCTGGCCACAGCTTCATTCACGACCCCAAGGTTGCCGGTGAAACTGAAACCAAGGGGCAGATTAAGCTCCGGTTCAAGACTGCGGCGGGCAAAGACGTTGTTTGCATAAGGTCCTTTCAGCTCACGCAGAAGGCGTCTAAGATGGAATACAAGGCAATTGAGAGTGTACTTCAAACTATTAATCCTCATACTGGAGAGAAAGTTTGCCTTAGCTATAGGTGCGCCGACATGGATCGAGAAATTCCCGCGCTCATGGGTGTTTCAAAGGCCATTCTGGAAAATGTTATATTTGTCCATCAAGATGAAGCCAATTGGCCACTGCAGGATCCTTCCACATTGAAGAAAAAGTTTGACGATATATTTTCTGCAACTCGATACACAAAGGCATTGGAGGTTATAAAGAAGCTTCACAAGGATCAGGCTCAAGAAATAAAGACTTACAAGCTGAAACTAGAAAATCTTCAAACACTGAAAGATGCTGCTTATAAGCTTCGGGAAAGCATTGCACAGGATCAGGAGAAAACAGAATCTCTAAAACTTCAGATACAAGAGTTGGAAGGAAGCATTCAAGATTTGGATGCTAAAATTCATCATTCAGAGAAAACAATGAAAGATCTGCGAAATCTGCAGGACCAGATATCAACTAAAACTGCTCAAAGAAGCACTCTGTTTAAGCAACAGCAGATACAATATGCAGCTCTTGCCGAGGAAAATGAAGACACTGATGAAGAGTTGATGGAATGGAAAACCAAGTTTGAAGAAAGGATTGCAATTTTACAAACAAAAATAAGCAAGTTGGAGAGAGAGATGAATGACACTGACACTAAAAGTTCTTTCCTTAAGCAGACCATCAATGATTCCATCTGGGAGATTAGCAAGCTACAAACTGAAGCAGAAGCTCACATGTCTTTGAAGAATGAACGTGATTTGTCCATTCAAACTCTTTTTGGTAGGCATAATTTAGGGTCTCTTCCAAAGTCACCCTTCAGTGATGAGGTTGCTACAAACCTCAGTAATCGTGTAAAATCAAGGTTGGTGGATCTTGAGAAGGATCTGCAAGATAAGAAGAGAATGAATGACAACAAACTCAAGATGGCATGGGATTGCTACATGAATGCAAATGACCGTTGGAAAAATACTGAGGCTCAAAAACAAGCTAAAATAGAGATCAAGAGTGGCATTGTAAAGCGCATTGAAGAGAAGGAAAACGAGCGTGATTCATTTGAACTTCAAATTTCTAATGTAGACCTTTCTCACATGGATGAAAGAGAAAGAAATTTGCGAATAGAGGTTGAGAGGAAGACAAACCAACTCGCTGAAAGAGACTTTGAAGCAACTATACGTCAAAAGCAAAGTGAACTATATAGTGTCGAACAAAAGATTAAGGCTGTAAACCGAGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTGAAGCTATCTCTAAAGAAGGCAGAGTTGGAGAATCAGAAGAAGAAACATAGAAAGATAATTGATGACCAAAAGGACAAAATAAGAAGGGTGCTAAAAGGGAGGGTCCCTAATGATAAAGATTTGAAGAAGGAAATTACACAAGCATTAAGGACCGTTGAAGGTGAATTTGATGATCTAAATGCAAAGTACCGTGAAGCTGAGAAGGAAGTGAATATGTTGCAGATGAAAATTCAAGAAGTTAATAGTAACCAATCCAAACATCACAGGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCCACAATGTTCTGGAATTGATTCTTATCTCAAAGTTTTAGAGGCTTTCAAGGAGAAAAGAGATTTCCTGAAAAGCAAGTTACACATTGGTGATGGTCTGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCCAGAGCTAATCATATTTGCCCTTGCTGTGAGCGCCCTTTCTCTGCAGAAGAAGAAGACAATTTTGTCAAGAAGCAAAGAGTGAAGGCTGCTAGTTCAACTGAACAAATGAAAGCTCTTGCCATGGAGTCCTCAAATGCAGACTCTCAATTTCAGCAGTTGGACAAGCTTCGCGTGGTTTATGAAGAATATGTTAAACTTAGTCAGGAGACAATCCCTAATGCCAAAAATGATCTTCAACAACTTAATGAGGAGTTGGATCACAAATCTCAGGCACTTGATGATGTTTTGGGTATTTTGGCTCAAGTAAAGACTGAGAAGGATTTGGTGGAGGCATTGGTGCAACCTATTGAAACCACTGATCGTCTCTTCCAAGAAATTCAAGCTTTGCAGAAGCAAGTTGAGGATTTAGAATATAAGCTTGATTTCCGAGGACAAGGAGTGAGGACTCTGGAAGAAATTCAATCGGAGCTTAACTCATTGCAGGGGACAAAGGACAATTTGCATTCTGAATTGGAGAAGTCGAGGGAAGAACAGAGATATATGGAGAATGATCTATCAAGTATTCAAATCCGATGGCACACTCTAAGGGAGGAGAAAGTGAAAGCAGCCAACACATTGCAAGATGTTAAAAGGGTAGAAGAAGAATTAGAACGTCTGACTGAAGAAAAGACCCAAATTGATCTTGATGAGAAGCATTTGACAGAAGCTCTTGGACCGTTATTGAAGGAGAAAGATAAATTACTTGCCGACTATAATGAACTGAAAATTAGACTTAACCATGAGTATGAGCACCTGGCTGAACAAAAGAGGAGTTATCAGCAAGAAGCTGAAGCACTTTTTAAGATGACTTCGAAGATTAAAGAGTACTCTGATTTAAAGAAAGGAGACAAGTTGAAGGAACTGCAGGAAAAGAAATCTCTATCAGAATCTCAACTTCAAAGTTGTGATGCGAGGAAGCAGGAAATTTTAGCTGAACTAAACAAGAGTAGAGATTTGATCCTAAATCAAGATCAATTAAAAAGAAATATTGAGGACAACTTAAATTACAGGAAAACAAAGGCTGAAGTAGATGAGCTAGCGCGTGAAATTGAAACACTGGAAGAAAGTATATTGAAGGTTGGTGGGGTTTCCACAGTTGAAACTGAACTCCAGAAACTATCTCAGGAGAGGGAGAGGCTTCTTTCAGAGTTAAACAGGTGCCATGGAACAATGTCTGTTTACCAAAGCAATATTTCCAAAAATAAGATTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGAGATACTTTGACCAGCTTATTCAGCTCAAGACAACTGAAATGGCAAACAAGGACCTTGACAGATACTACAATGCACTAGATAAAGCACTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATTAGGGAATTGTGGCAGCAAACTTATAGAGGACAGGATATAGATTACATTAGTATTCATTCAGATTCAGAAGGTGCTGGGACCCGTTCCTATAGTTACAAGGTTCTCATGCAGACTGGTGATGCTGAGTTAGAAATGAGAGGAAGATGTAGTGCTGGTCAGAAGGTCCTTGCTTCTCTTATCATACGGTTGGCTTTGGCCGAAACTTTTTGCCTGAATTGTGGAATACTAGCACTGGATGAACCTACAACAAATTTGGATGGGCCAAATGCTGAGAGTCTGGCTGCTGCTCTCCTAAGGATCATGGAGGACAGGAAAGGGCAGGAAAATTTTCAGCTAATTGTAATTACCCATGATGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCGGAGAGATATTATCGAGTCGCAAAAGATGACCTTCAGCACAGCATAATAGAAAGTCAGGAGATATTTGACTGA 3951 0.4034 MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESLKLQIQELEGSIQDLDAKIHHSEKTMKDLRNLQDQISTKTAQRSTLFKQQQIQYAALAEENEDTDEELMEWKTKFEERIAILQTKISKLEREMNDTDTKSSFLKQTINDSIWEISKLQTEAEAHMSLKNERDLSIQTLFGRHNLGSLPKSPFSDEVATNLSNRVKSRLVDLEKDLQDKKRMNDNKLKMAWDCYMNANDRWKNTEAQKQAKIEIKSGIVKRIEEKENERDSFELQISNVDLSHMDERERNLRIEVERKTNQLAERDFEATIRQKQSELYSVEQKIKAVNREKDIMASDSEDRVKLSLKKAELENQKKKHRKIIDDQKDKIRRVLKGRVPNDKDLKKEITQALRTVEGEFDDLNAKYREAEKEVNMLQMKIQEVNSNQSKHHRDLESRKRFIESKLQSLDPQCSGIDSYLKVLEAFKEKRDFLKSKLHIGDGLRQMFDPFERVARANHICPCCERPFSAEEEDNFVKKQRVKAASSTEQMKALAMESSNADSQFQQLDKLRVVYEEYVKLSQETIPNAKNDLQQLNEELDHKSQALDDVLGILAQVKTEKDLVEALVQPIETTDRLFQEIQALQKQVEDLEYKLDFRGQGVRTLEEIQSELNSLQGTKDNLHSELEKSREEQRYMENDLSSIQIRWHTLREEKVKAANTLQDVKRVEEELERLTEEKTQIDLDEKHLTEALGPLLKEKDKLLADYNELKIRLNHEYEHLAEQKRSYQQEAEALFKMTSKIKEYSDLKKGDKLKELQEKKSLSESQLQSCDARKQEILAELNKSRDLILNQDQLKRNIEDNLNYRKTKAEVDELAREIETLEESILKVGGVSTVETELQKLSQERERLLSELNRCHGTMSVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDLQHSIIESQEIFD* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0700 1316 Coils Coil 228 269 - -
Dod04g0700 1316 Coils Coil 884 918 - -
Dod04g0700 1316 Gene3D - 4 280 IPR027417 -
Dod04g0700 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 1286 IPR027417 -
Dod04g0700 1316 Coils Coil 398 425 - -
Dod04g0700 1316 Coils Coil 987 1007 - -
Dod04g0700 1316 Coils Coil 458 478 - -
Dod04g0700 1316 Pfam AAA domain 7 255 IPR038729 GO:0140664
Dod04g0700 1316 Coils Coil 937 971 - -
Dod04g0700 1316 Coils Coil 1038 1058 - -
Dod04g0700 1316 Coils Coil 839 866 - -
Dod04g0700 1316 Gene3D - 1017 1315 IPR027417 -
Dod04g0700 1316 PANTHER RAD50 1 1314 - -
Dod04g0700 1316 Coils Coil 753 780 - -
Dod04g0700 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Dod04g0700 1316 Coils Coil 808 828 - -
Dod04g0700 1316 Coils Coil 1065 1092 - -
Dod04g0700 1316 TIGRFAM rad50: rad50 3 1309 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Dod04g0700 1316 CDD ABC_Rad50 4 170 IPR045171 -
Dod04g0700 1316 Coils Coil 538 565 - -
Dod04g0700 1316 Coils Coil 581 622 - -
Dod04g0700 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 291 IPR027417 -
Dod04g0700 1316 Coils Coil 197 217 - -
Dod04g0700 1316 CDD ABC_Rad50 1205 1308 IPR045171 -
Dod04g0700 1316 Coils Coil 284 336 - -
Dod04g0700 1316 Coils Coil 507 527 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0700 K10866 - jre:109008437 2212.57