Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0692 ATGAAAAGCCGATTCTTTCTCCTTTTAATGTTTGTTGTTGCTGCTTTACCTTGCTTCTGTGCTCGAATAATGCCTCAAACAGGCATTAGCTTCAATGTTCTTGACTACGGTGCCCAAGGGAACGGCCAAACTGATGATTCACAAGCTTTTTTGAAAGCATGGCAAGACGTGTGTGGCGCAACTCAGGATGCCCCAACTCTTATCATTCCTGAAGGGAAAACCTTCATGTTGCAGCCTGTTTTATTCCAAGGTCCCTGCAAATCAGCAACAGTAAACGTTGAGCTACAGGGGACTATCGTTGCCCCAAACAGTGTTGAGGCTTGGAAATGGCCAGATAATGATAAGGGTGCATGGCTGCGGTTCTGTGACATAAGTGGCCTTGTTATCAATGGGCGTGGACAAATTGATGGCCAAGGTGCTGCATGGTGGAATTGCAACAACTGTAATAGGCCAACTGCTCTGCATTTCCATGTTTGTGAAAACCTAAGACTTAGTGGATTGACTCACATCAACAGTCCTAGAAACCATGTAGCCATAAATGGATGCAATGGCTCATGGATCTCCAGTCTTCAAATCACTGCACCAAAGGAAAGCCCAAACACAGATGGAATCGATATTTCAAGCTCTTCCAACGTGGTCATTACACATTCTACCATGAAAACTGGCGATGATTGTATTGCAATTAATGGTGGTTCATCCTTCATCAACATATCTGGTATTTACTGCGGACCTGGTCATGGCATTAGTATTGGAAGCCTTGGAAGAAATGGTGCATATGAAACAGTGGAAGAGATACACGTGCGAAATTGCACCTTCTATGGAACTCAAAATGGGGCCAGGATCAAAACATGGATTGGAGGATCTGGGTATGCCAAGAAAATTACATTTGAGGATATTAAACTTGTTGGAGCTGACAACCCTGTGATTATTGACCAGCATTATGACACGCACGATGCTTCAGTAGCAGTGAATGCAGTGAAAGTGAGCGATGTTACTTATCGCAGAGTGTGGGGAACCTCAAGTTGTGAGGATGCAGTGAAATTAAATTGTGATGCCAACATAGGGTGCACCAACATTGTGTTGGAGGGGATTAATATAACCTATGCTGCTGCTGGAGAAAAAACACATGCATCATGCGAAAATGCACAAGGGGCATGCTCTTCATGTAATCCAAATGTCCCATGTCTTAAGTAA 1194 0.4372 MKSRFFLLLMFVVAALPCFCARIMPQTGISFNVLDYGAQGNGQTDDSQAFLKAWQDVCGATQDAPTLIIPEGKTFMLQPVLFQGPCKSATVNVELQGTIVAPNSVEAWKWPDNDKGAWLRFCDISGLVINGRGQIDGQGAAWWNCNNCNRPTALHFHVCENLRLSGLTHINSPRNHVAINGCNGSWISSLQITAPKESPNTDGIDISSSSNVVITHSTMKTGDDCIAINGGSSFINISGIYCGPGHGISIGSLGRNGAYETVEEIHVRNCTFYGTQNGARIKTWIGGSGYAKKITFEDIKLVGADNPVIIDQHYDTHDASVAVNAVKVSDVTYRRVWGTSSCEDAVKLNCDANIGCTNIVLEGINITYAAAGEKTHASCENAQGACSSCNPNVPCLK* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0692 397 PANTHER - 24 396 - -
Dod04g0692 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Dod04g0692 397 Gene3D - 22 394 IPR012334 -
Dod04g0692 397 PANTHER - 24 396 - -
Dod04g0692 397 Pfam Glycosyl hydrolases family 28 64 386 IPR000743 GO:0004650|GO:0005975
Dod04g0692 397 SMART pbh1 182 208 IPR006626 -
Dod04g0692 397 SMART pbh1 262 283 IPR006626 -
Dod04g0692 397 SMART pbh1 291 312 IPR006626 -
Dod04g0692 397 SMART pbh1 209 230 IPR006626 -
Dod04g0692 397 SUPERFAMILY Pectin lyase-like 19 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0692 Dod-Chr4 10517407 10519491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0692 1 397 Glycoside Hydrolase AT5G17200 46.154 1.27e-127 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0692 K01184 - rcu:8287292 454.521