Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0683 ATGTCAGGGTGTCACCACCACCTGTCCCATGCACACGCACTCCTCCACTCCCACCTCTCCCTTGCACGCCACAACCCATCCCTGGCCAAGGCCCTCCACGCCCACATCATCAAGACCGGCCTCCACAACCACCACCCCTTCCCCGCCACCCTCATCCACTCCTACGCCCACTCCGGCCTCCCCCACCACGCCCTCCGCCTCTTCCACAACCACCGCCACCACCACCCGCACCCACCCCACCCCGTCGCCTGGTCCTCCGCCCTCTCCGCCGCCAACCTCGCCTCCCTCCCCCGCCTCTCCCTCTCCCTCTCCCTCCCCATCCTCCGCTCCCACCCCTCCCTCCCCGACCACTTCGTCTTCGCCACTCTCTTCAAGTCCCTCTCCTCCCTCTCCCGCCTCCACCTCCCCCAAGCCCAGCAACTCCACGCCAGGTTCCTCCTCTCCCCTTTCTCCCAAGACGACGTCGTCAAATCCTCCCTCGTCGACATGTACTCCAAATTCGGCCTCCCACGCCACGCGCGCGCCGTTTTCGACTCCATCTCGTCGTTCAACAAGGCCTCCTGGACATCCATGATTTCCGGGTACGCCCGTAACGGCTTCAAGCCCGAGGCCTTGAAGCTCTTCCGTGAGGCCCCCAATGGCAGGGACTTGTTTGCTTGGACCGCTTTGATCTCCGGGTTTGTTCAGAGCGGGAACGGCGCCGATGCGTTGAAGCTGTTCGTCAAAATGCTCCGTGAAGCTGTCGAGATCGTTGACCCTTTGGTCCTGTCTAGTGTGGTTGGGGCTTGTGCTAATTTGGCTCTTTGGGAGCTCGGGAAGCAGGTGCATTGTTTGGTGATGTCTCTCGGGTTCGAGTCCTGTGTATTCGTGAGCAATGCGCTTGTTGATATGTATGCCAAGTGCAGCGACCTTGCTGCTGCGAAGGGTGTTTTTTATGGTATGAGCAGGAAGGATGTGGTTTCTTGGACTTCCATTATTGTCGGAAGTGCGCAGCATGGAAGAGCTGAGGAGGCGTTGGCTTTGTATGACGGCATGGTTTCGGCCGGTGTTAAGCCGAATGAGGTGACCTTTGTGGGGTTGATGTATGCGTGCAGCCACGTTGGTTTGGTCGGCAAGGGACGCGAGCTGTTCAGGTCTATGGTGGAGGATCATGGAATTAGGCCTTCACTGCAGCATTATACTTGTTTGCTGGATCTTTTGAGCAGGTCAGGGTACCTTGAAGAGGCTGAGGATGTCATTAGGACGATGCCGGTTACCCCTGATGAGCCTACTTGGGCTGCTTTGCTCAGTGCTTGTAAGCGCCACGGTAACACCAGGATGGCAATTAGGATTGCGGATCATCTGTTGTGTTTAAAGCCAGAAGAGACTTCCTCCTATATATTGCTATCTAATGTTTATGCTGCTGCTGGTATGTGGGAAAATGTTTCGAAGGTGAGGAAGTTGATGATGGTCATGGAGGTTAAGAAGGAACCGGGTTATAGCTGCATTGAGTTGGGAAAGGAGAGCTATGTGTTTTACGCCGGAGAGACGACTCATCCGATGAAGGATGAGATTCAGGCTTTAATGAGGAAGTTGGATGCAGAGATGAGGAAAAGGGGTTATGTCCCTGATACTAGCTCGGTTTTGCATGACATGGATCAGCAAGAGAAGGAAAGACAACTTTTCTGGCATAGTGAGAGGTTGGCTGTTGCTTATGGGGTTCTTAAGGCTCTTCCAGGGACTATTATACGTGTAGTGAAAAATCTTCGTGTTTGTGGAGATTGCCATACTGTTCTGAAGCTCATCAGCACCATAGCAAGTAGGGAAATTTACGTTAGAGATGCTACGAGATATCACCATTTCAAAGATGGGAAATGTTCCTGTAATGACTTCTGGTGA 1878 0.5421 MSGCHHHLSHAHALLHSHLSLARHNPSLAKALHAHIIKTGLHNHHPFPATLIHSYAHSGLPHHALRLFHNHRHHHPHPPHPVAWSSALSAANLASLPRLSLSLSLPILRSHPSLPDHFVFATLFKSLSSLSRLHLPQAQQLHARFLLSPFSQDDVVKSSLVDMYSKFGLPRHARAVFDSISSFNKASWTSMISGYARNGFKPEALKLFREAPNGRDLFAWTALISGFVQSGNGADALKLFVKMLREAVEIVDPLVLSSVVGACANLALWELGKQVHCLVMSLGFESCVFVSNALVDMYAKCSDLAAAKGVFYGMSRKDVVSWTSIIVGSAQHGRAEEALALYDGMVSAGVKPNEVTFVGLMYACSHVGLVGKGRELFRSMVEDHGIRPSLQHYTCLLDLLSRSGYLEEAEDVIRTMPVTPDEPTWAALLSACKRHGNTRMAIRIADHLLCLKPEETSSYILLSNVYAAAGMWENVSKVRKLMMVMEVKKEPGYSCIELGKESYVFYAGETTHPMKDEIQALMRKLDAEMRKRGYVPDTSSVLHDMDQQEKERQLFWHSERLAVAYGVLKALPGTIIRVVKNLRVCGDCHTVLKLISTIASREIYVRDATRYHHFKDGKCSCNDFW* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0683 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Dod04g0683 625 Gene3D Tetratricopeptide repeat domain 252 370 IPR011990 GO:0005515
Dod04g0683 625 Pfam DYW family of nucleic acid deaminases 533 625 IPR032867 GO:0008270
Dod04g0683 625 SUPERFAMILY TPR-like 217 478 IPR011990 GO:0005515
Dod04g0683 625 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 613 - -
Dod04g0683 625 Gene3D Tetratricopeptide repeat domain 371 564 IPR011990 GO:0005515
Dod04g0683 625 Pfam PPR repeat 219 246 IPR002885 -
Dod04g0683 625 Pfam PPR repeat 393 416 IPR002885 -
Dod04g0683 625 Pfam PPR repeat 50 69 IPR002885 -
Dod04g0683 625 Pfam PPR repeat 158 180 IPR002885 -
Dod04g0683 625 Pfam PPR repeat 187 210 IPR002885 -
Dod04g0683 625 Pfam PPR repeat family 317 364 IPR002885 -
Dod04g0683 625 PANTHER OS11G0661000 PROTEIN 17 613 - -
Dod04g0683 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 388 IPR002885 -
Dod04g0683 625 TIGRFAM PPR: pentatricopeptide repeat domain 219 246 IPR002885 -
Dod04g0683 625 TIGRFAM PPR: pentatricopeptide repeat domain 320 354 IPR002885 -
Dod04g0683 625 TIGRFAM PPR: pentatricopeptide repeat domain 355 389 IPR002885 -
Dod04g0683 625 Pfam E motif 437 497 IPR046848 -
Dod04g0683 625 Gene3D Tetratricopeptide repeat domain 107 251 IPR011990 GO:0005515
Dod04g0683 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 214 IPR002885 -
Dod04g0683 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0683 Dod-Chr4 10318520 10321215 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0683 24 625 Glycoside Hydrolase AT3G49170 36.688 3.82e-122 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0683 - - adu:107482332 895.96