Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0678 ATGTCCAAAATGGCTTCTACTCGAAATGGGTTTTATGTGCTTATGCTTTTGAGCTCTATGGTTGCTGCCTGTGCTGCTAACTTCTACCAAGACTTTGATCTAACATGGGGTGATAACCGTGGTAAGATATTCAATGGAGGCCAGCTCCTGTCTCTTTCCCTGGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAGGAGTACCTCTTTGGGAGGATTGATATGCAGCTCAAGCTCGTTTCTGGCAACTCTGCTGGCACTGTCACTGCTTATTATTTGTCATCACAAGGGCCAACACATGACGAGATTGATTTCGAATTCTTGGGGAACGTGAGTGGTGATCCGTACATTCTCCATACCAACGTCTTTACCCAGGGCCAAGGTAACAGAGAGCAGCAATTCTACCTGTGGTTCGACCCCACCAGAAACTTCCACACATACTCCATCATCTGGAAGCCCCAGCACATCGTATTCTTGGTTGACAACATCCCCATAAGGGTATTCAAGAATGCTGAATCTCGTGGTGTCCCTTTCCCAAAGAACCAGCCCATGAGGATCTATTCTAGCCTCTGGAATGCTGATGACTGGGCCACAAGAGGTGGCTTGGTGAAAACTGATTGGTCCAAGGCACCCTTCACAGCCTACTACCGCAACTTCAAAGCCACAGAGTTCTCCTCCGCGTCTTCCAACTCCTTCTCTGATTCTGCAATGCAAAGCAATGAGCTTGATGCTTATGGCAGAAGAAGGCTTAGGTGGGTTCAGAAGTACTTCATGATCTATGACTACTGCAACGATCTTAAGCGATTCCCACAAGGCCTTCCTGCTGAGTGTGGGCACTGA 840 0.4798 MSKMASTRNGFYVLMLLSSMVAACAANFYQDFDLTWGDNRGKIFNGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVSGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIVFLVDNIPIRVFKNAESRGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSSASSNSFSDSAMQSNELDAYGRRRLRWVQKYFMIYDYCNDLKRFPQGLPAECGH* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0678 279 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 13 278 - -
Dod04g0678 279 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 235 277 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Dod04g0678 279 PIRSF EndGlu_transf 1 279 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dod04g0678 279 ProSitePatterns Glycosyl hydrolases family 16 active sites. 102 112 IPR008263 GO:0004553|GO:0005975
Dod04g0678 279 Gene3D - 14 279 - -
Dod04g0678 279 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 13 278 IPR044791 GO:0004553
Dod04g0678 279 Pfam Glycosyl hydrolases family 16 29 209 IPR000757 GO:0004553|GO:0005975
Dod04g0678 279 PRINTS Glycosyl hydrolase family 16 signature 60 78 IPR008264 GO:0004553|GO:0005975
Dod04g0678 279 PRINTS Glycosyl hydrolase family 16 signature 136 153 IPR008264 GO:0004553|GO:0005975
Dod04g0678 279 PRINTS Glycosyl hydrolase family 16 signature 118 131 IPR008264 GO:0004553|GO:0005975
Dod04g0678 279 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 22 216 IPR000757 GO:0004553|GO:0005975
Dod04g0678 279 CDD GH16_XET 25 277 IPR016455 GO:0010411|GO:0016762|GO:0042546
Dod04g0678 279 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Dod04g0678 279 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 277 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0678 Dod-Chr4 10147571 10150235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0678 8 277 Glycoside Hydrolase AT3G23730 73.214 4.47e-161 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0678 K08235 - gmx:100499905 524.628