Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0676 ATGGAGAATGTCCTAACTCACAATCAAACTCATACCCTCACCCACCACATCCATTTCTACCCAAATTGCAGAAACACTATACACAGAGAGTGGAAGAGCAGCAACAACTTCTTCCTCAAACCCCATTTGGGAAAACCTTGTGCCAAATTCCCATCCCTTAGCACCCAAATTCCCCTTGCCTCTATCCACCCATTTCCACCACCGACTAATACAGTTTCAGACTCAAAGCACACAACCCTTCTCGTTGAGACTTACCATGTCCACCGCCGCCTCAGAATCTTACTTTCAAAGCTCGAGAAGGGAGATTCGGACCCTCTTCGGATACTCAGCGAAGACGGTGATTGGCCCAGAGAGTACTTCTGGGCCGTTGTCAAGTTCCTCAAACATGCCTCAAGATTCCCAGAAATCGTTCAGGTATTTGATATGTGGAAGAACATTGAGATATCACGGATTAATGAGTTGAACTATAACAAGATCATATCCTTGTTAGGTGAAGAAGGAATTATGGAAGATGCCGTGTCTGCTTTGCAAGAGATGAAAACTCATGGTCTTAAACCTTCTTTGGAGACCTACAATCCAATAATTCACGGATTCTCCAGAGAAGGTAAATTTGGGGAATCTTTGAATTTTCTTGATGAGATGAAAGAATTTGGTTTGGCGCCGGATACTGAGACTTATGATGGATTAATTCGAGCTTATGGGAAATTTAAAATGTACGATGAGATTGGTAAGTGTGTGAAGAAGATGGAGTTGGATGGATGCTCTCCTGATCACATCACTTATAATATACTTATACAAGAGTATTCACGAGGTGGTGTAATCCAGAGGATGGAAAAACTATACCATAGAATGATTTCGAAAAGAATGCAGTTGCAGTCTTCTACTTTGGTTGCAATGCTTGAGGCTTATGCCACATTTGGTATGGTTGAAAAGATGGAAACATTTTATAGAAAATTGTTGAACTCGAAAACACATCTAGACGATGATTTGATAAGAAAATTGGCTGAAGTGTATATCAAGAACTACATGTTTTCTAGATTAGAGGACCTGGGACTAGAATTACATTCAGCTTTTGGTGGGTCTGACCTTGTATGGTGTCTCCGCCTCCTTTCTTATGCATGTCAGTTGAGTCGAAAAGGTATGGATATAATTGTTCAAGAAATGCAGCATGCCAAGTTTCATTGGAATGTTAATATTGCAAATATTATCATGCTGGCATATGTGAAGATGAAAGACTTCAAGAACTTGAGGATTTTGCTCTCGCAATTCCCAATCCATCAGGTGAAGCCTGATATAATCACTATTGGAATTGTATTTGATGCGAATAGAATTGGCTTTGATGGTAGTAGAGCTTTAGAAACATGGAGAAGAATGGGTTATCTTTACAGAGTTGTAGAAATGGAAACAGATTCTCTGGTTCTTACTGCATTTGGGAAAGGCCATTTTCTTAAAAACTGTGAAGAAGCATACTCTTCCCTTCACTCTGAGGATAGAGAAAGGAAAACATGGACTTATTATAACCTCATTGCTTTAGTCTCAGAACATAGTGGTAGTATCGACTTTATGAAACCAAATTAG 1578 0.3973 MENVLTHNQTHTLTHHIHFYPNCRNTIHREWKSSNNFFLKPHLGKPCAKFPSLSTQIPLASIHPFPPPTNTVSDSKHTTLLVETYHVHRRLRILLSKLEKGDSDPLRILSEDGDWPREYFWAVVKFLKHASRFPEIVQVFDMWKNIEISRINELNYNKIISLLGEEGIMEDAVSALQEMKTHGLKPSLETYNPIIHGFSREGKFGESLNFLDEMKEFGLAPDTETYDGLIRAYGKFKMYDEIGKCVKKMELDGCSPDHITYNILIQEYSRGGVIQRMEKLYHRMISKRMQLQSSTLVAMLEAYATFGMVEKMETFYRKLLNSKTHLDDDLIRKLAEVYIKNYMFSRLEDLGLELHSAFGGSDLVWCLRLLSYACQLSRKGMDIIVQEMQHAKFHWNVNIANIIMLAYVKMKDFKNLRILLSQFPIHQVKPDIITIGIVFDANRIGFDGSRALETWRRMGYLYRVVEMETDSLVLTAFGKGHFLKNCEEAYSSLHSEDRERKTWTYYNLIALVSEHSGSIDFMKPN* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0676 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Dod04g0676 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Dod04g0676 525 TIGRFAM PPR: pentatricopeptide repeat domain 156 187 IPR002885 -
Dod04g0676 525 TIGRFAM PPR: pentatricopeptide repeat domain 225 257 IPR002885 -
Dod04g0676 525 TIGRFAM PPR: pentatricopeptide repeat domain 259 289 IPR002885 -
Dod04g0676 525 TIGRFAM PPR: pentatricopeptide repeat domain 190 223 IPR002885 -
Dod04g0676 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Dod04g0676 525 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 22 517 - -
Dod04g0676 525 Pfam PPR repeat 259 288 IPR002885 -
Dod04g0676 525 Pfam PPR repeat 156 184 IPR002885 -
Dod04g0676 525 Gene3D Tetratricopeptide repeat domain 115 270 IPR011990 GO:0005515
Dod04g0676 525 Pfam PPR repeat family 190 234 IPR002885 -
Dod04g0676 525 Gene3D Tetratricopeptide repeat domain 343 519 IPR011990 GO:0005515
Dod04g0676 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 22 517 - -
Dod04g0676 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0676 154 322 Miscellaneous Gene Families AT4G11690 27.219 8.95e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0676 - - ahf:112795661 806.594