Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0660 ATGGCCCCTCCCAAAGTTCTCATGGTCGCAGAGAAGCCCAGCATCGCGCTCTCTATTGCCTCTGTTCTCTCCGGCGGCAAGATGTTTACAAGGAAGGGAAGCACAGAAGTTCATGAATTTGAGGGGATGTTTCGTGGATTCCCTGCGCGTTTTAAAGTGACATCAGTCATTGGACATGTTTTCAGTGTAGATTTTCCTGCTAAATATCAAGATTGGACAGCCACAGATCCATTAGATCTTTTTCAAGCCCAGATTGTAAAGAGTGAATCAAACTCAAAGGCACATATTTGTAGACATTTGAATCAAGAAGCTCGTGGGTGTCATTATTTGGTATTGTGGTTAGATTGTGATCGCGAAGGAGAAAATATATGTTTTGAGGTTATAGAGTCAACTGGATTCAAAATAAATGACACTTACCGTGCACGGTTTTCTTCTGTTACTGAGAAAGATGTTCTGAAAGCTCTAGACAATCTTGTCAAACCCAACAGGGATGAGGCATTGGCTGTTGATGCTAGGCAAGAGATAGATTTAAAAGTTGGAGTTGCCTTTACTCGATTTCAGACGAGTTATTTCCAGGGAAAATATGGGAACCTAGATTCCAGGGTCATCTCCTATGGACCATGTCAAACTCCTACCCTTGGCTTTTGCGTGCAGCGGCATTTGCTAATAAATACTTTCAAGCCAGAAAAATTTTGGAGTTTGCACCCATACATAATTCAAAATGGCTACGAAATTCAGCTAGAATGGCAACGTAGCAAATTATTTGACAAAAATGTTGTTATGATGTTTCAACAGCTGGTTGCTGAAGATGGACTTTTGGATGTTACTGAAATATCAGAAAAACAGGAAACCAAAGGTCGCCCTGTTGGTCTAAATACTGTGAATCTTTTGAAGGTTGCTTCAAGTGCTCTAGGGTTTGGTCCTCAGATGGCTATGCAAATAGCTGAACGATTGTACACTCAAGGCTTCATCAGCTATCCACGCACAGAAAGCACAGCATACCCTCCTTCATTTGACTTTTCTGGTGCACTCTCTGCACAAGCAAATAATCCAACATGGGGCGATTATGTAAAAGGGCTACTTGCTAACAGTTATCACAAACCTCGATCAGGAACAGATGCAGGCGACCATCCACCCATTACTCCAATGAGATCAGCTACAGAGGATAGTCTGGGAAATGATGCTTGGAAGCTGTACCAATATATTTGCCAACATTTCATAGGGACGGTGTCGCCGGACTGCAAGTATATAAGGAGAAAGGTTGATTTTTCAATTGGTGGAGAGTCCTTTCATTGTACAGGGCAGCATGTCATCACCAAAGGATTTACAGCTATTATGCCTTGGTTGGCCATGAATGATAAAAACATTCCTTCATTTATGAAAGGGCAGAAAATAGAAGTGTCAAAACTGGAGCTATATGAGGGGAGTACCACACCTCCAGATTATCTTACTGAAAGTGAGCTGATCTCCCTGATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCTGTACATATTAACAACATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGTAGGAAGCTTGTCCCAACTACGCTAGGTATAACTTTGGTAAGAGGTTATCAATCAATCGATCCAGACCTCTGCCTGCCCGATATTCGTAGCTTCATTGAGCAGCAAATTACTCTTATTGCTAACGGTCAGGTAGATCATCGTCGTCTAGTGCAGCATGTAATCCAACAATTCAAGCAGAAGTTCAGTTACTTTGTCAAGAAGATTGAAGATATGGATGCATTATTTGAAGCACAGTTTTCTACACTGACTGATTCAGGGCGTGTTATAAGTAAATGTGGTAAATGCTTGCGGTATATGAAGTACATTTCTGCTCTGCCATCACGTTTGTATTGTGGTACATGTGAGGAGGTTTATTATCTTCCACAGATGGGCACAATCAAGCTGTACAAGGAACTGTCTTGCCCTCTAGATAATTTTGAGCTTTTGCTCTGCTCCATGCCTGGTCCAGAGGGTAAATCATTCCCACTATGCCCATACTGCTACAGCAATCCACCATTTGAAGGAATTGAAGCACTCATCAATACCGCAAAAACTGGTCCTTCTGGCAAGATTGGTAAGGGAGCTGGCATGCCATGCAATCTCTGCCCCCATCCCACTTGCCCAAATTCTCTTGTTTCCCAGGGTGTATGTGCTTGCCCAGAATGCACTGGGACACTTGTCTTAGACCTGGTAAGCGCCCCCAAGTGGCGGCTCTGTTGCAACAAGTGCAATCTGCCTTGTTTTTCTTCCACAAGGTGCTCATAG 2307 0.4287 MAPPKVLMVAEKPSIALSIASVLSGGKMFTRKGSTEVHEFEGMFRGFPARFKVTSVIGHVFSVDFPAKYQDWTATDPLDLFQAQIVKSESNSKAHICRHLNQEARGCHYLVLWLDCDREGENICFEVIESTGFKINDTYRARFSSVTEKDVLKALDNLVKPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRHLLINTFKPEKFWSLHPYIIQNGYEIQLEWQRSKLFDKNVVMMFQQLVAEDGLLDVTEISEKQETKGRPVGLNTVNLLKVASSALGFGPQMAMQIAERLYTQGFISYPRTESTAYPPSFDFSGALSAQANNPTWGDYVKGLLANSYHKPRSGTDAGDHPPITPMRSATEDSLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVDFSIGGESFHCTGQHVITKGFTAIMPWLAMNDKNIPSFMKGQKIEVSKLELYEGSTTPPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIANGQVDHRRLVQHVIQQFKQKFSYFVKKIEDMDALFEAQFSTLTDSGRVISKCGKCLRYMKYISALPSRLYCGTCEEVYYLPQMGTIKLYKELSCPLDNFELLLCSMPGPEGKSFPLCPYCYSNPPFEGIEALINTAKTGPSGKIGKGAGMPCNLCPHPTCPNSLVSQGVCACPECTGTLVLDLVSAPKWRLCCNKCNLPCFSSTRCS* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0660 768 PANTHER DNA TOPOISOMERASE 3-BETA-1 4 760 - -
Dod04g0660 768 Pfam DNA topoisomerase 161 571 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 MobiDBLite consensus disorder prediction 367 386 - -
Dod04g0660 768 Gene3D Topoisomerase I, domain 4 287 412 IPR013826 -
Dod04g0660 768 SMART topIban2 137 233 IPR003601 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 CDD TOP1Ac 164 582 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 316 330 IPR023406 GO:0003917
Dod04g0660 768 Gene3D Topoisomerase I, domain 2 168 582 IPR013824 -
Dod04g0660 768 PANTHER PROKARYOTIC DNA TOPOISOMERASE 4 760 IPR000380 GO:0003677|GO:0003917|GO:0006265
Dod04g0660 768 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 PRINTS Prokaryotic DNA topoisomerase I signature 203 221 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 PRINTS Prokaryotic DNA topoisomerase I signature 398 414 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 PRINTS Prokaryotic DNA topoisomerase I signature 496 510 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 PRINTS Prokaryotic DNA topoisomerase I signature 321 330 IPR013497 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 SMART toprim5 5 136 IPR006171 -
Dod04g0660 768 Gene3D Topoisomerase I, domain 3 227 480 IPR013825 -
Dod04g0660 768 Gene3D - 2 161 - -
Dod04g0660 768 ProSiteProfiles Toprim domain profile. 5 145 IPR006171 -
Dod04g0660 768 CDD TOPRIM_TopoIA_TopoIII 5 158 IPR034144 -
Dod04g0660 768 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 622 IPR023405 -
Dod04g0660 768 SMART topIaneu2 279 534 IPR003602 GO:0003677|GO:0003916|GO:0006265
Dod04g0660 768 Pfam Toprim domain 6 145 IPR006171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0660 Dod-Chr4 9840660 9854475 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0660 K03165 - gmx:100791807 1437.17