Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0616 ATGCAAACCAAGAAAAAGGCCTCTAGGCAAAATGCTACTCGAGAGCGTGGTAGTCCTCGTGTTTCAAGAGCCCAGAGGATGGTCCCTGAAAATGGACAAGCAGTTGAAAAGAAGATCACCGACTTAATTACATCATCTTCTAGAAAAAATAAATCTTTGAGCACTCTTGAGAATAAAGCTGGAGAGTCAATGCCCTCAACAGATTTGAGTGATCGGTATGACTTTGTGGATCATGGGACTTCCAATGTTTGTTGGCAAAATGATGCAGTTAATGGTGCTTCATTAGACCATTTGGGGTATAACAAGCAAGCTGCTCATCTGGAGTCTGGAACTATATTTTCTCCTGGCTTTCACTTATCCAAAGGTTCTGGAGGAAAAGTTGTTGACAGAGTTGATTTTGTCAAACTTTTTCAGAATGAAGACCAAAAAAGGTTTTCTCCAGATCAAGAAATTGAGTTACCACAGGTGGATACAGTAGATGGTCCTGTTACTCAAGGTTGTGGCAATGCAATGGAAGTGGACATAAATAATTCATCCAACTATGCCAACAATCCACAATGCAGTGATCAGATGCTTGCTTTATCCACAAAAGATGTGAGCAATTCTGATTTTGATGGAAATGGTCTTTCCTTGGAAGTTTCTGCCATATATCTTGCCGTGAAAAACTCAAAGCTGGAATGTATTGATGAGCATGGCCAGGATTCTATGACTTCTGATATATGCCCAGAGGATGATGAATTTGAGGATTTTGATGACTTCAACCCTTACTTATTCATAAAGACCTTACCTGACTTATCAACAGTGGTTCCTACTTTTAGACGATTGTTGCTACCTAAGCAAACACGGAGTTGCCCTCCTACTACTCTTGTCTTGGACTTGGATGAAACTTTGGTGCATTCTACGCTAGAACCTTGTGAGGATGTAGACTTCACTTTTCCTGTTAATTTTAATTGTGAGGAGCACATTGTGTATGTACGCTGCCGTCCTCACCTCAAAGATTTCCTCGATAGGGTTTCTAGACTTTTTGAGATTATTATATTTACAGCTAGTCAAAGCATCTATGCTGAGCAACTTCTAAATGTGCTTGATCCAAAGCGGAAGATATTTCGCCACCGTGTATACCGAGAGTCATGTGTTTATGTGGAGGGGAATTACCTCAAAGATTTAACAGTGCTTGGTCGTGATTTAGCTCGTGTTATGATAATTGACAACTCCCCACAGGCTTTTGGGTTCCAGGTGGATAATGGAATACCAATTGAGAGTTGGTTTGATGATCGTTCAGATCAAGAATTGCTCTTATTGCTTCCGTTCTTGGAGAGCTTGGTTGGAGTCGATGATGTCCGGCCTCTGATTGCGAAGAAGTTCAACCTGCGGGAGAAAATTGCTGCTGCTGCTGTGCATCCTCTAAATGCAAATAGAAGAGATTTCTTATCAGAATGA 1440 0.4097 MQTKKKASRQNATRERGSPRVSRAQRMVPENGQAVEKKITDLITSSSRKNKSLSTLENKAGESMPSTDLSDRYDFVDHGTSNVCWQNDAVNGASLDHLGYNKQAAHLESGTIFSPGFHLSKGSGGKVVDRVDFVKLFQNEDQKRFSPDQEIELPQVDTVDGPVTQGCGNAMEVDINNSSNYANNPQCSDQMLALSTKDVSNSDFDGNGLSLEVSAIYLAVKNSKLECIDEHGQDSMTSDICPEDDEFEDFDDFNPYLFIKTLPDLSTVVPTFRRLLLPKQTRSCPPTTLVLDLDETLVHSTLEPCEDVDFTFPVNFNCEEHIVYVRCRPHLKDFLDRVSRLFEIIIFTASQSIYAEQLLNVLDPKRKIFRHRVYRESCVYVEGNYLKDLTVLGRDLARVMIIDNSPQAFGFQVDNGIPIESWFDDRSDQELLLLLPFLESLVGVDDVRPLIAKKFNLREKIAAAAVHPLNANRRDFLSE* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0616 479 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 1 465 - -
Dod04g0616 479 SUPERFAMILY HAD-like 275 452 IPR036412 -
Dod04g0616 479 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 287 450 IPR011948 GO:0016791
Dod04g0616 479 MobiDBLite consensus disorder prediction 1 68 - -
Dod04g0616 479 CDD HAD_FCP1-like 288 419 - -
Dod04g0616 479 MobiDBLite consensus disorder prediction 38 65 - -
Dod04g0616 479 PANTHER INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED 1 465 - -
Dod04g0616 479 ProSiteProfiles FCP1 homology domain profile. 282 441 IPR004274 -
Dod04g0616 479 Pfam NLI interacting factor-like phosphatase 288 448 IPR004274 -
Dod04g0616 479 SMART forpap2 285 429 IPR004274 -
Dod04g0616 479 Gene3D - 272 456 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0616 Dod-Chr4 8913885 8917205 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0616 K17616 K12778 gmx:100804307 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0616 04 8913885 8917205 Dod04g0616 04 8913885 8917205 ECH