Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0607 ATGTCGCTGGCATCTTTCTCCATCCTCCGCCACACCCACCACCGTGCGGTGGCTGCTTCCGCCGCACCTCTCCCACCTCTCACGACCCTCCTACGCCGCTGCTTCCGATGCCTCCCAGTCTCCTCCGCCGCAGCAAGGCACCAAAACCCTAACCGGCAACACCAACAACAAGCCCCAAGCAAGAACCTCCTCAAAGCGAAGCAAACCATGAAGGACTTCTCGTCCCTCGCCCCCGTCCTCTCCGTCGAGACCCCCCCGCCCCTCTCTGACTCCCAGGCCATCGGCATCGTCGCCGCCGCCCAGGCCAACTTCATGCGCGTCATCGTCCACTCCCTCCCTCCTTCTAGAACCTTCGAAAACGATGAGCTTCTTCGAGAATCTTCTTCCACTTCCGGTTCCGGTTCCGTTGGTGTTGAGCTTCTTTGCGTGGTGAGGGCGCTGCTGAAGAAGATAAAGCGGAGGGTGATGGTCGGTGACCAGGTTCTAGTAGGTTCCATCGATTGGGTGGACCGAAGGGGAATGATCGAGAACGTGTTCCAGAGGGAATCGGAGATCCTGGACCCTCCCGTGGCAAATGTGGACCACTTGCTTGTGCTTTTCTCGCTCGAGCAACCGAAGGTGGAGCCTTTCATGCTCACGAGGTTTCTTGTTGAAGCTGAATCCACTGGGATCCCTCTCACCCTCGCCCTCAATAAGATGGAGCTTGTGGATGGAGAGACCATAAGCTCATGGAAAGCTAGGCTGCGCAGCTGGGGCTATGAGCCGAATTTCTGCAGCGTGGAGTCTGGACATGGACTTGATCTTCTTGCATTCAAATTGAGAGATCAAACAACTGTGATTGTGGGTCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTTAGAATCAACCCCCGTACTTGTGATACTGAAGAAGGGGTCAATTGGTTTGAACCTATTTTAGGTAGCAAGTGGTTTGAGGATCAGCGAGTTGGGGAGGTTTCAACAAGAAGCGGCAGAGGGAAGCATACTACTCGTCATGTCTCTCTGCTTCCATTATCTGGAGGGGGTTATCTTGCTGATACACCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAATCTCTTGCACAAGCATTTCCCGAAATCAGGAAAATGCTTAGCGCAAATGAGCCCGCGAAATGTGCATTTAACGATTGTTTGCATCTGGGTGAACCTGGGTGCATTGTGAAGGGGGATTGGGAAAGATATTCATTCTATTTTCAACTACTTGATGAAATTAGAATCAGAGAGGAGTTCCAGCTGAGGACATTTGGAACCAAAAGAGAAGGTGATGTAAGGTTCAAAATGGGAGATATGGGTGTTCAGCAAGCAGAACCACGGTTGGAACCTAAGAAGCACAGGAGACAATCTCGGAAGAGGATGAACCAATCAATATTAGATGAATTGGATGATGATGACGACACTTTGCTTGATGAGGAGAACGATCCCATGTTAAGGGCTTTGAGGAATGAAAGACATTAG 1512 0.5099 MSLASFSILRHTHHRAVAASAAPLPPLTTLLRRCFRCLPVSSAAARHQNPNRQHQQQAPSKNLLKAKQTMKDFSSLAPVLSVETPPPLSDSQAIGIVAAAQANFMRVIVHSLPPSRTFENDELLRESSSTSGSGSVGVELLCVVRALLKKIKRRVMVGDQVLVGSIDWVDRRGMIENVFQRESEILDPPVANVDHLLVLFSLEQPKVEPFMLTRFLVEAESTGIPLTLALNKMELVDGETISSWKARLRSWGYEPNFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINALRINPRTCDTEEGVNWFEPILGSKWFEDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQAFPEIRKMLSANEPAKCAFNDCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRFKMGDMGVQQAEPRLEPKKHRRQSRKRMNQSILDELDDDDDTLLDEENDPMLRALRNERH* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0607 503 MobiDBLite consensus disorder prediction 447 503 - -
Dod04g0607 503 SUPERFAMILY Nucleic acid-binding proteins 94 181 IPR012340 -
Dod04g0607 503 ProSiteProfiles EngC GTPase domain profile. 191 360 IPR010914 GO:0003924|GO:0005525
Dod04g0607 503 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 155 296 IPR004881 GO:0003924|GO:0005525
Dod04g0607 503 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 83 484 IPR004881 GO:0003924|GO:0005525
Dod04g0607 503 Gene3D - 177 364 IPR027417 -
Dod04g0607 503 Gene3D Probable gtpase engc; domain 3 366 428 - -
Dod04g0607 503 Pfam RsgA GTPase 178 364 IPR010914 GO:0003924|GO:0005525
Dod04g0607 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 423 IPR027417 -
Dod04g0607 503 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 83 484 - -
Dod04g0607 503 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 183 362 IPR030378 GO:0005525
Dod04g0607 503 CDD YjeQ_EngC 191 421 IPR004881 GO:0003924|GO:0005525
Dod04g0607 503 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 93 427 IPR004881 GO:0003924|GO:0005525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0607 K06949 - gmx:100796145 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0607 04 8750297 8754210 Dod04g0607 04 8750297 8754210 ECH