Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0556 ATGGAATTGATGCCATACCAGCTTTCCAGGCTACCTTACCATGATTCCCTCAAAATACTGGAGGCTGATATTCAGCATGCCAATGCTTTGGCTGCTGCAATTCCCAGAGCAAAAGGTGGGACTCTTCTTCAAATGAAATTGGTTTACAATCAACTGGCTCCTCTGTTTCTGTTATTTCTACAGTGGATGGATTGTTCCTGTGCTGGCTTTCTCCACAGATATCTCAACCTTTTCCACGTAGTTATATACAAGGTACACAATGATGGTAGATCAAACATATCTAGTCATGGAAGAAAGGCAACCATAGGGGACTTTTATGCCGTTATATTGCCATCTCTTCAGCGGCTTCACGGTAGCTTGGAGAAGTTGGAGACTTCAGAAGTAGGGCAATCATCTAGCATGGAAGGTACAAGTTATGGCAAGAAGATGATTGAAGGAGATGGGAAACTAACCAATGTAGACTTGCAGAGAGAAGATGAGTGTGGGATTTGCTTAGAACCTTGCACCAAAATGGTCTTGCCTAATTGCTGCCATGACATGTGTATCAAATGCTACCGCAAGTGGAACACTCGGTCACAATCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGGGTTAACTCGGAGGATCTATGGGTACTAACTTGTAATGAAGATGTTGTTGATGCTGAAACAGTTTCTAAGGAGGACTTACGGCGTTTCTACCTCTATATCAACAATCTACCTATAGATCACCCAGATGCACTTTTCCTAATGTATTATGAATACTTGATTTGA 774 0.4238 MELMPYQLSRLPYHDSLKILEADIQHANALAAAIPRAKGGTLLQMKLVYNQLAPLFLLFLQWMDCSCAGFLHRYLNLFHVVIYKVHNDGRSNISSHGRKATIGDFYAVILPSLQRLHGSLEKLETSEVGQSSSMEGTSYGKKMIEGDGKLTNVDLQREDECGICLEPCTKMVLPNCCHDMCIKCYRKWNTRSQSCPFCRGSLRRVNSEDLWVLTCNEDVVDAETVSKEDLRRFYLYINNLPIDHPDALFLMYYEYLI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0556 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Dod04g0556 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Dod04g0556 257 PANTHER RING FINGER PROTEIN 41, 151 6 257 - -
Dod04g0556 257 SMART ring_2 161 198 IPR001841 -
Dod04g0556 257 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 257 - -
Dod04g0556 257 SUPERFAMILY RING/U-box 152 203 - -
Dod04g0556 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 210 IPR013083 -
Dod04g0556 257 Pfam Ring finger domain 159 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0556 Dod-Chr4 7950471 7952246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0556 - - gmx:100812518 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0556 04 7950471 7952246 Dod04g0556 04 7950471 7952246 ECH
Dod04g0556 04 7950471 7952246 Dod04g1990 04 43347687 43349769 PCT