Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0538 ATGGACAAGATGCTCCAAAACCCCGACGGCGACGTCACCATCACGAATGATGGGGCAACGATCTTGGAGCAGATGGATGTTGATAACCAGATCGCAAAGCTGATGGTTGAGTTGTCCAGGAGCCAGGATTATGAAATTGGTGATGGCACCACTGGAGTTGTCGTCATGGCTGGGGCTCTTCTTGAGCAAGCTGAGCGGCTCTTGGAACGAGGGATTCATCCGATTAGGATTGCTGAGGGCTACGAAATGGCGTCCAGGATTGCTTTTGAACACCTGGAGCATATAGCTAACAAGTTTGAATTTGGGGTGACGAATTTGGAGCCTCTGATTCAAACTTGTATGACTACCCTTTCTTCAAAAATCGTGAATCGGTGCAAGCGCAGCTTGGCTGAGATTGCTGTCAAGGCTGTTCTTGCTGTTGCTGATCTAGAGAGAAAAGATGTTAACTTGGATCTAATTAAAGTAGAAGGAAAAGTTGGTGGTAAATTGGAAGATACTGAGTTGATATATGGAATTGTTGTTGACAAGGATATGAGCCATCCCCAAATGCCAAAGCAAATTGAAGATGCTAAAATTGCTATTTTGACTTGCCCCTTTGAGCCTCCAAAACCAAAGACTAAGCATAAGGTTGACATTGATACAGTGGAGAAGTTCCAGACGCTCAGGAAGCAAGAACAACAGTATTTTGACGACATGGTTAAAAAATGCAAGGATGTTGGCGCAACCCTGGTTATCTGCCAGTGGGGCTTTGATGATGAAGCAAATCATCTCTTAATGCACAGGAACTTGCCTGCTGTCAGATGGGTTGGTGGTGTAGAGTTGGAACTGATAGCTATTGCAACAGGTGGAAGAATTGTACCTAGATTTCAGGAGTTAACTCCAGAAAAACTGGGAAAGGCTGGTCTGGTTCGAGAAAAATCCTTTGGTACAACTAAAGACCGGATGCTGTACATTGAGCATTGTGCAAACTCAAGAGCTGTAACAATATTCATTCGCGGAGGTAATAAAATGATCATAGAGGAGACAAAGCGCAGCCTTCATGATGCCTTGTGTGTGGCTAGGAATCTCATCCGCAACAATTCTATTGTATATGGTGGTGGTTCAGCTGAAATTTCGTGCTCTATTGCTGTGGAAGCTGCTGCTGATAGATATCCTGGAGTAGAGCAGTATGCTATCAGAGCATTTGGTGATGCTTTGGATGCTATCCCTATGGCCCTTGCTGAAAATAGTGGGCTCCAACCTATTGAAACGTTATCTGCTGTGAAGTCTCAGCAAATAAAGGATAATAATCCTCACTTTGGAATTGATTGCAATGATGTTGGCACTAACGACATGCGCGAGCAAGATGTCTTTGAAACCTTGATTGGAAAGCAGCAACAGATCTTACTGGCTACCCAAGTTGTGAAGATGATATTGAAAATTGACGATGTTATTTCCCCATCCGATTACTGA 1452 0.4387 MDKMLQNPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERLLERGIHPIRIAEGYEMASRIAFEHLEHIANKFEFGVTNLEPLIQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRKQEQQYFDDMVKKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTKDRMLYIEHCANSRAVTIFIRGGNKMIIEETKRSLHDALCVARNLIRNNSIVYGGGSAEISCSIAVEAAADRYPGVEQYAIRAFGDALDAIPMALAENSGLQPIETLSAVKSQQIKDNNPHFGIDCNDVGTNDMREQDVFETLIGKQQQILLATQVVKMILKIDDVISPSDY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0538 483 CDD TCP1_epsilon 1 479 IPR012718 GO:0005524|GO:0006457|GO:0051082
Dod04g0538 483 SUPERFAMILY GroEL equatorial domain-like 1 479 IPR027413 -
Dod04g0538 483 Gene3D - 1 478 IPR027413 -
Dod04g0538 483 PANTHER CHAPERONIN 1 480 IPR017998 GO:0140662
Dod04g0538 483 Gene3D GroEL 170 324 IPR027409 -
Dod04g0538 483 ProSitePatterns Chaperonins TCP-1 signature 3. 42 50 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Dod04g0538 483 SUPERFAMILY GroEL apical domain-like 165 333 IPR027409 -
Dod04g0538 483 Gene3D - 98 360 IPR027410 -
Dod04g0538 483 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 1 480 IPR012718 GO:0005524|GO:0006457|GO:0051082
Dod04g0538 483 ProSitePatterns Chaperonins TCP-1 signature 2. 14 30 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Dod04g0538 483 PANTHER BNAA08G19100D PROTEIN 1 480 - -
Dod04g0538 483 Pfam TCP-1/cpn60 chaperonin family 1 479 IPR002423 GO:0005524
Dod04g0538 483 PRINTS Tailless complex polypeptide 1 (chaperone) signature 328 350 IPR017998 GO:0140662
Dod04g0538 483 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 61 IPR017998 GO:0140662
Dod04g0538 483 PRINTS Tailless complex polypeptide 1 (chaperone) signature 362 374 IPR017998 GO:0140662
Dod04g0538 483 PRINTS Tailless complex polypeptide 1 (chaperone) signature 12 30 IPR017998 GO:0140662
Dod04g0538 483 SUPERFAMILY GroEL-intermediate domain like 104 360 IPR027410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0538 Dod-Chr4 7730190 7734642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0538 126 389 EF-hand Containing Proteins AT3G14270 22.535 1.55e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0538 K09497 - gmx:100817323 915.22