Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0490 ATGACATCTTCGGTGTTTGAGGATGGACACGACAAGGACAAACACGAGCCCTCGGATTTGATCAAGGAAAATCTGAATCTGACGGCTACAAATCTTGCACTTCCCAGTGAAACTTTCCTGAGAGCCGCAGTTTCCCTCAAGGACCAGGTGGTGGAGGTGACTTGGAACCGGAGAGAAGTGGTTGATCCGACGGTGTACACGGGCTTGCTGGGCACAGCTTTCACTTGCTTGAGGTCGTACCAGGTCACTGGCAACCAGAAGGACTTGCAATTATGCGCAGAGATCGTAGACACGTGTGCCACTGTTGCACGTGCCTCACTCAGGCACGTTACCTTTTTGTGTGGTAGAGGAGGGGCATACGCGCTTGGTGCGGTCGTTGCTAATTACATGGGGGACCATCGAAAGCTTGATCTGTTTTTGGGTCTATTTATTGAGGTAGCAAGAGAGAGAGCTCTACCTGTTGGACCTGAGGAAGGAGGTTTCGGAATGTCATATGATCTTCTATATGGACGTGCTGGATTCCTATGGGGTGCATTATTTGTGAACAAGTGCTTAGGAGAAGATGCCGTTCCCACTGATATTTTGATGCCAATTATTGATGCTGTGTTGGCTGGGGGCAGGGCAGGGGCATCTGATATTAAGGACTGTCCATTGATGTATAGATGCCACGGGACAAGGTACTTGGGTGCAGCAAACGGTCTTGCGGGGATCCTGCATGTGTTGCTTCATTTTCAGCTTCCTGGTGAGGATGCTGAGGATGTCAAGGGAACTTTGAGATACCTCATGAGTAAACGGTTTCCTCACAGTAGGAACTACCCCTCAAGTGAAGGGAATCCAAGGGATAAGTTGGTGCAGTGGGGTCATGGTGCAACTGGCATGGCCATCACCTTGTCCAAAGCAGCACAGGTTTTTCCAAGTGACAGAGAAATCCGAGATGCCGCAATAGAAGGAGGGGAAGTTGCGTGGAAGAGTGGATTGAAGAAGAAGGTGGGACTGGCTGATGGTGTGTCTGGGAATGCATACGCCTTCCTTTCCCTCTACCGACTAACCAAAGAGAGCATATATAAAGAGAGAGCAAAAGCGTTAGCTTGCTTGTTATATGATAATGTAAGCGCTCTAGCTGCTGAGGGGCAAGCACTTGGTGGTGGCAATGCCTATTCCCTCTTCCAAGGACTAGCTGGGACAGCATGCCTCTGGTTTGATCTGCTTGCACCAGAGAACTCTAGGTTCCCAGGCTATGAATTATAG 1248 0.496 MTSSVFEDGHDKDKHEPSDLIKENLNLTATNLALPSETFLRAAVSLKDQVVEVTWNRREVVDPTVYTGLLGTAFTCLRSYQVTGNQKDLQLCAEIVDTCATVARASLRHVTFLCGRGGAYALGAVVANYMGDHRKLDLFLGLFIEVARERALPVGPEEGGFGMSYDLLYGRAGFLWGALFVNKCLGEDAVPTDILMPIIDAVLAGGRAGASDIKDCPLMYRCHGTRYLGAANGLAGILHVLLHFQLPGEDAEDVKGTLRYLMSKRFPHSRNYPSSEGNPRDKLVQWGHGATGMAITLSKAAQVFPSDREIRDAAIEGGEVAWKSGLKKKVGLADGVSGNAYAFLSLYRLTKESIYKERAKALACLLYDNVSALAAEGQALGGGNAYSLFQGLAGTACLWFDLLAPENSRFPGYEL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0490 415 PRINTS LanC-like protein superfamily signature 385 402 IPR007822 -
Dod04g0490 415 PRINTS LanC-like protein superfamily signature 283 303 IPR007822 -
Dod04g0490 415 PRINTS LanC-like protein superfamily signature 330 343 IPR007822 -
Dod04g0490 415 PRINTS LanC-like protein superfamily signature 62 80 IPR007822 -
Dod04g0490 415 PRINTS LanC-like protein superfamily signature 165 180 IPR007822 -
Dod04g0490 415 PRINTS LanC-like protein superfamily signature 227 243 IPR007822 -
Dod04g0490 415 PANTHER LANC-LIKE PROTEIN GCL1 18 415 - -
Dod04g0490 415 Pfam Lanthionine synthetase C-like protein 60 415 IPR007822 -
Dod04g0490 415 SUPERFAMILY LanC-like 47 415 - -
Dod04g0490 415 SMART LANC_like_2 59 415 IPR007822 -
Dod04g0490 415 CDD euk_LANCL 65 411 - -
Dod04g0490 415 Gene3D - 3 415 IPR012341 GO:0005975
Dod04g0490 415 PRINTS Eukaryotic LanC-like protein family signature 401 415 IPR020464 -
Dod04g0490 415 PRINTS Eukaryotic LanC-like protein family signature 263 278 IPR020464 -
Dod04g0490 415 PRINTS Eukaryotic LanC-like protein family signature 195 210 IPR020464 -
Dod04g0490 415 PANTHER LANC-LIKE PROTEIN 18 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0490 Dod-Chr4 6932556 6940925 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0490 - - gmx:100785406 690.263