Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0476 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAGGCTCTTGGCGACCAATTCCCCGAAGGAGAACGCTACTTCGGCCTCGAGAATTTCGGCAACACTTGTTACTGCAACAGTGTTTTGCAGGCACTATACTTCTGTGTTCCATTTCGTGAACAATTGCTAGAGTATTATGCAAATAACAAAAGCATAGCGGATGCCGAGGAAAATCTTTTAACTTGCTTAGCTGACTTATTTTCACAGATAAGTTCCCAGAAGAAAAAAACAGGTGTCATTGCTCCCAAAAGATTTGTACAGAGGCTAAAAAAGCAGAATGAACTCTTCCGTAGCTATATGCATCAGGATGCCCACGAATTCTTGAACTTTTTGTTAAATGAACTTGTCGACATTCTGGAGAAAGAGGCCCAGGCCGCCAAAGATGATCAAGAGACATCACCACCTTCTGAAAAGGTTGCAAATGGGCCTAAGACTGGTCCAGCTAATGGTGCTAAAAAAGAGCCTTTAGTTACTTGGGTTCACAAAAATTTTCAGGGAATACTCACCAACGAGACAAGGTGCTTGCAATGTGAAACAGTGACTGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCGATTACAAGCTGTTTGAAAAACTTCAGTTCGACAGAGACACTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGCTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCGCCTCAAGTCTTGGTCATCCATCTTAAGCGGTTTAAGTACATTGAACAGCTGGGCCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTTCCCCTTGAGCTGAAGCTGAGTGATACTGTTGAGGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGTAGTGGCCCCAACCACGGCCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCCGCCGTTCAAACATTCTTTGGGTCATCGCAAGAATATTCCAGTAATACAGATCATGGTTACATTTTGTTCTATGAGAGTATCGCCTCTGGTAACAACAAGAACTAG 1113 0.4286 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSIADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKDDQETSPPSEKVANGPKTGPANGAKKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPQVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIASGNNKN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0476 370 SUPERFAMILY Cysteine proteinases 21 361 IPR038765 -
Dod04g0476 370 CDD Peptidase_C19G 24 361 - -
Dod04g0476 370 Gene3D Cysteine proteinases 5 362 - -
Dod04g0476 370 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Dod04g0476 370 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 367 - -
Dod04g0476 370 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 367 - -
Dod04g0476 370 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Dod04g0476 370 MobiDBLite consensus disorder prediction 133 161 - -
Dod04g0476 370 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Dod04g0476 370 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0476 Dod-Chr4 6758884 6764238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0476 24 334 Miscellaneous Gene Families AT4G31670 26.332 4.71e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0476 K11842 - gmx:100305765 726.857