Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0448 ATGCGGCGGTTACTTATTCTGTTACTCTCATCGCTGCTCCCTCTAACGGCTCTCGCAATGCCGTCACCAACCGCCACGACGTTCTCCGCCACGCTGGTTCACCGGTTCTCCCGAGAGCTGAACGCGGTTCGGAACCGAACCGGAACCGGAACCGGAACCGGTCCGTTGCCGAACCGGCCAAGCATGCGGTACTACCAGATGCTGCTCCGAAGCGACAGGATCAGGCTCGGAGCCCGCCACCAGCTCCTGCTCTTCCCCTCTCGCGGTGGCAAAACGATGTCGCTTGGCAACGATTTCGGTTGGTTGCATTACACGTGGATTGATATAGGGACGCCGAGTACGTCGTTTCTTGTGGCGTTGGATGCTGGGAGCGATCTGCTGTGGGTGCCGTGTGATTGCATACGGTGTGCTCCCTTGTCTGCAAGTTACTATGCCAATCTGGATAGAGATCTGAATGAGTATAGTCCTTCTCGTTCAATATCCAGCAAGCATCTATCTTGTAGCCATGAGTTATGTGATATGGGTTCGAACTGTAAGAGTTCCAAGCAGCAGTGTCCATACACAGTCAATTACTCATCAGAGAATACATCAAGTTCTGGATTGTTGGTTGCGGATATATTGCATCTTCAATCAGGTGGTGGTGGTGGCAGTGGCGGTGCATTGAATTCTTCTGTTCAGGCTCCAGTGATTATTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTGGCGCCTGATGGTCTCCTGGGTTTGGGACCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGAATAATCCGTGATTCTTTCTCCTTGTGTTTTAATGATGATGATTCTGGACAAATACTTTTTGGTGACCAAGGACCAACCATTCAACATTCTACTGCATTCTTGCCATTGGATGGAACGTTTTCAACCTACATTATTGGAGTGGAGGCATGCTGTATTGGGAACCCTTGTCTTAAAATGACAAGTTTTAAAGCGCAGGTTGATAGCGGAACATCATTTACATTTCTTCCTGGCCATGTATACGAAGCAATAGCTGAGGAGTTTGATAAAAATGTAAATGCTTCAAGATCTAGCTTTGAAGGGTCTCCTTGGGAGTACTGTTATGCATCCAGGTCAAAAGAGTTGCCGAAAGTTCCCACTCTAACACTCATGTTCCAACAGAATAACAGCTTGTTGGTCTATAATCCTGTGTTTGTATTTTATGGCAATCAGGGAATAATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGGGATATAGGAACAATTGGACAAAACTTCATGACCGGGTATCGGTTTGTATTTGATCGAGAAAACAAGAAGCTAGCCTGGTCACGCTCAAATTGTGAGTCATTTTACTCCTCATCATATGTATCCAAAGTTTAA 1407 0.4677 MRRLLILLLSSLLPLTALAMPSPTATTFSATLVHRFSRELNAVRNRTGTGTGTGPLPNRPSMRYYQMLLRSDRIRLGARHQLLLFPSRGGKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWVPCDCIRCAPLSASYYANLDRDLNEYSPSRSISSKHLSCSHELCDMGSNCKSSKQQCPYTVNYSSENTSSSGLLVADILHLQSGGGGGSGGALNSSVQAPVIIGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGIIRDSFSLCFNDDDSGQILFGDQGPTIQHSTAFLPLDGTFSTYIIGVEACCIGNPCLKMTSFKAQVDSGTSFTFLPGHVYEAIAEEFDKNVNASRSSFEGSPWEYCYASRSKELPKVPTLTLMFQQNNSLLVYNPVFVFYGNQGIIGFCLAIQPTEGDIGTIGQNFMTGYRFVFDRENKKLAWSRSNCESFYSSSYVSKV* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0448 468 Gene3D Acid Proteases 291 458 IPR021109 -
Dod04g0448 468 ProSiteProfiles Peptidase family A1 domain profile. 103 452 IPR033121 -
Dod04g0448 468 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 14 461 - -
Dod04g0448 468 CDD pepsin_like 107 453 IPR034164 -
Dod04g0448 468 Pfam Xylanase inhibitor N-terminal 104 290 IPR032861 -
Dod04g0448 468 PRINTS Pepsin (A1) aspartic protease family signature 109 129 IPR001461 GO:0004190|GO:0006508
Dod04g0448 468 PRINTS Pepsin (A1) aspartic protease family signature 332 343 IPR001461 GO:0004190|GO:0006508
Dod04g0448 468 PRINTS Pepsin (A1) aspartic protease family signature 428 443 IPR001461 GO:0004190|GO:0006508
Dod04g0448 468 PANTHER ASPARTYL PROTEASES 14 461 IPR001461 GO:0004190|GO:0006508
Dod04g0448 468 Gene3D Acid Proteases 92 290 IPR021109 -
Dod04g0448 468 Pfam Xylanase inhibitor C-terminal 331 452 IPR032799 -
Dod04g0448 468 SUPERFAMILY Acid proteases 97 458 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0448 Dod-Chr4 6183381 6188362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0448 96 459 Miscellaneous Gene Families AT1G44130 27.436 2.27e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0448 - - gmx:100782209 710.294