Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0416 ATGGCGGATCAGTTAGCGAAAGCTGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGCTGGGGCTTGTTTGGCTCCAAATACGAGGACGCCGCTGATCTCTTCGATAAAGCCGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCGGGATCAACATACCTCAAGTTGGCAAGTTGTCATCTGAAGTTGGAAAGCAAGCATGAGGCTGCCCAAGCTTATGTTGACGCGGCACATTGCTACAAAAAGACTAATATAAGTGAGTCTGTATCTTGCTTAAACAATGCTGTAAATCTTTTCTGTGACATTGGAAGACTCTCTATGGCGGCTAGATATTTGAAGGAAATTGCTGAGTTGTATGAGTCTGAACAGAATATTGAGCAGGCTGTTGTTTACTATGAAAAATCTGCTGATTTTTTTCAAAGTGAAGAAGTTACAACTACTGCAAACCAGTGCAAGCAAAAGGTTGCTCAATTTGCTGCTCAGCTAGAACAGTATCAGAAATCAATTGAGATTTATGAAGAGATAGGTCGCCAATCTCTCAACAATAACTTGCTGAAGTATGGGGTTAAAGGACATCTTCTCAATGCTGGCATTTGCCAACTCTGTAAAGGGGATGTTATTGCTATAACCAATGCATTAGAGAGATATCAGGAAATGGATCCAACATTTTCAGGAACACGTGAATATAGATTTTTGGCAGATATTGCTGCTGCAATTGATGAAGAAGATGTTGGAAAGTTTACTGACGTTGTCAAGGAATTTGATAGCATGACTCCTCTGGTAAGCACCTAG 801 0.412 MADQLAKAEEFEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDKAGSTYLKLASCHLKLESKHEAAQAYVDAAHCYKKTNISESVSCLNNAVNLFCDIGRLSMAARYLKEIAELYESEQNIEQAVVYYEKSADFFQSEEVTTTANQCKQKVAQFAAQLEQYQKSIEIYEEIGRQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQEMDPTFSGTREYRFLADIAAAIDEEDVGKFTDVVKEFDSMTPLVST* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0416 266 Coils Coil 151 178 - -
Dod04g0416 266 CDD SNAP 19 263 IPR000744 GO:0006886
Dod04g0416 266 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Dod04g0416 266 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Dod04g0416 266 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Dod04g0416 266 PRINTS NSF attachment protein signature 255 266 IPR000744 GO:0006886
Dod04g0416 266 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Dod04g0416 266 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Dod04g0416 266 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Dod04g0416 266 SUPERFAMILY TPR-like 7 262 IPR011990 GO:0005515
Dod04g0416 266 Gene3D Tetratricopeptide repeat domain 4 266 IPR011990 GO:0005515
Dod04g0416 266 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 265 IPR000744 GO:0006886
Dod04g0416 266 Pfam Soluble NSF attachment protein, SNAP 7 263 - -
Dod04g0416 266 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0416 Dod-Chr4 5439028 5442853 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0416 K15296 - gmx:100812517 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0633 08 7567408 7571818 Dod04g0416 04 5439028 5442853 ECH
Dod04g0416 04 5439028 5442853 Dod04g0416 04 5439028 5442853 ECH
Dod04g0416 04 5439028 5442853 Dod08g0633 08 7567408 7571818 PCT