Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0301 ATGGCATACAAAGTGGACCATGAATACGACTACCTCTTCAAGATCGTACTCATTGGGGACTCTGGTGTAGGAAAATCCAACATCCTCTCTAGGTTCACACGAAATGAGTTCTGCTTGGAATCTAAGTCCACCATTGGGGTTGAATTTGCAACCAGAACATTGCAGGTGGAAGGGAAGACAGTGAAGGCACAAATATGGGACACTGCTGGTCAAGAGAGGTACCGAGCTATCACTAGTGCATACTATAGAGGAGCTGTTGGTGCTTTGTTGGTCTATGACATAACAAAGAGGCAAACATTTGACAATGTGCAGAGGTGGCTCAGGGAACTAAGGGACCATGCAGACTCCAACATTGTTATAATGATGGCTGGGAACAAGAATGACCTGAATCATCTCAGAGCTGTTTCCCCTGAAGATGCTCAGGGTTTGGCTGAGAAGGAAGGCCTTTCATTTCTAGAGACTTCAGCATTGGAGGCCTATAATGTTGAGAAGGCATTCCAAACCATTTTGTTTGATATATATCACATTATAAGCAAAAAGGCACTGGCTGCACAGGAGGCTGCAGTTTCCGGTACTAGCCTTCCAAGGGGCAAAACCATAGATGTCTCAAATATGTCAGGTAATGTGGAAAAGAAAACATGTTGCTCAAATTAA 654 0.4404 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKNDLNHLRAVSPEDAQGLAEKEGLSFLETSALEAYNVEKAFQTILFDIYHIISKKALAAQEAAVSGTSLPRGKTIDVSNMSGNVEKKTCCSN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0301 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Dod04g0301 217 Gene3D - 5 215 IPR027417 -
Dod04g0301 217 ProSiteProfiles small GTPase Ras family profile. 1 217 IPR001806 GO:0003924|GO:0005525
Dod04g0301 217 SMART arf_sub_2 1 185 - -
Dod04g0301 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Dod04g0301 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Dod04g0301 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Dod04g0301 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Dod04g0301 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Dod04g0301 217 SMART ran_sub_2 18 215 - -
Dod04g0301 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Dod04g0301 217 PANTHER - 1 217 - -
Dod04g0301 217 CDD Rab11_like 10 174 - -
Dod04g0301 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 177 IPR027417 -
Dod04g0301 217 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 217 - -
Dod04g0301 217 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Dod04g0301 217 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Dod04g0301 217 SMART ras_sub_4 10 176 - -
Dod04g0301 217 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Dod04g0301 217 SMART rab_sub_5 13 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0301 Dod-Chr4 3741981 3743209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0301 K07904 - gmx:100799595 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0301 04 3741981 3743209 Dod04g0301 04 3741981 3743209 ECH
Dod04g0301 04 3741981 3743209 Dod08g0753 08 9045993 9047727 PCT