Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod04g0293 | ATGAATGGCGAAGGGAGTGAAGCGGCATTGGAAAGGGGGAAGGAGAGGTTGGTCTACATGTGGGGTTACCTGCCGGGAGCTCTGCCGCAGAGGACGCCGCTCTTGACGCCGGTGCTCGCTAGGGTTCCCCTTTCGGGTTACTCCTGGAGGGATGTTTGGGGTGGTGGCTGTGGATTCGCCATGGCTATTTCCGATTCAGGAAAGCTCATGACATGGGGCTCAACTGATGATCTAGGCCAAAGCTATGTGACATCTGGCAAGCATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGCCACTATTGTAAAAGCTGCAGCTGGATGGGCGCATTGTGTTTCTGTAACAGATTGTGGAGAGGTTTACACATGGGGATGGAAGGAATGTATTCCCTCTGGGAAGGTATTCGGTGAACCATCAACTGGGGTAAGTCCTGAAAAAGATGTAGCAGGAAGACAGAGTTCATTCGTGACGGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAAATCTACAGGTGGAACTGCCTCCAGTACCAGTGGCGAAGAAAGTACAAAGCGAAGGAGAGTATCTTCAGCAAAGCAAACAGCTGAAACATCATCATCTTGTGATGATACTCTGTCAGCATTGCCATGTCTTGTCACACTGAACCCAGGTGTAAGGATAATAAGTGTTGCTGCTGGTGGACGCCATACCCTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGCCAGCTTGGTTTGGGTTCCAGAATACGTATGGTCTCCTCTCCTCATCTTGTTCCTTGTGTTGATTCCTCTTCTTATGGCAAAGATAGATCGTCATCACTGGTTCGAGGAAGCATGAGTTCAGAGGGACAGAACTTTAGAGTTCCTGGAAGTTATATAAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGATGCCGGAGCTGTGCTTGCTTTTGGTTGGGGACTTTATGGACAGTGTGGACAAGGAAGTACAGATGATGAACTGAGCCCAAACTGCGTGTCTTCCTTATTGGGTATCCGAATAGAGGGAGTCGCAGCTGGACTATGGCATACTGTCTGTATGTCTGCTGATGGTGATGTATATGCATTTGGTGGGAACCAGTTTGGGCAGCTGGGAACTGGTACTGATCAAGCTGAGACTCTACCGAGGCTACTAGACTCTTCGAGCTTGGAAAATGTGAACGTAAAGACCATATCTTGTGGGGCTCGTCACACTGCTCTAATAACAGAGGATGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGTTGGGCCTTGGGGACGTGATTGACCGTAACATTCCTTCTGAAGTCACAATCGAAGGTTGCGTAGCCAAAAACGTTGCGTGTGGCTGGTGGCACACACTTCTTCTGGCAGAGTCACCCACTTGA | 1434 | 0.4979 | MNGEGSEAALERGKERLVYMWGYLPGALPQRTPLLTPVLARVPLSGYSWRDVWGGGCGFAMAISDSGKLMTWGSTDDLGQSYVTSGKHGETPEPFPLPTEATIVKAAAGWAHCVSVTDCGEVYTWGWKECIPSGKVFGEPSTGVSPEKDVAGRQSSFVTEQVSPRSQGSKSTGGTASSTSGEESTKRRRVSSAKQTAETSSSCDDTLSALPCLVTLNPGVRIISVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCVDSSSYGKDRSSSLVRGSMSSEGQNFRVPGSYIKGIACGGRHSAVITDAGAVLAFGWGLYGQCGQGSTDDELSPNCVSSLLGIRIEGVAAGLWHTVCMSADGDVYAFGGNQFGQLGTGTDQAETLPRLLDSSSLENVNVKTISCGARHTALITEDGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT* | 478 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod04g0293 | 477 | MobiDBLite | consensus disorder prediction | 148 | 181 | - | - | |
| Dod04g0293 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 305 | 315 | IPR000408 | - | |
| Dod04g0293 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 319 | 370 | IPR000408 | - | |
| Dod04g0293 | 477 | Gene3D | - | 196 | 273 | IPR009091 | - | |
| Dod04g0293 | 477 | Gene3D | - | 274 | 477 | IPR009091 | - | |
| Dod04g0293 | 477 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN | 12 | 477 | - | - | |
| Dod04g0293 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 424 | 472 | IPR000408 | - | |
| Dod04g0293 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 370 | 421 | IPR000408 | - | |
| Dod04g0293 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 319 | 367 | IPR000408 | - | |
| Dod04g0293 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 239 | 318 | IPR000408 | - | |
| Dod04g0293 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 360 | 378 | IPR000408 | - | |
| Dod04g0293 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 103 | 116 | IPR000408 | - | |
| Dod04g0293 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 420 | 441 | IPR000408 | - | |
| Dod04g0293 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 225 | 241 | IPR000408 | - | |
| Dod04g0293 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 67 | 119 | IPR000408 | - | |
| Dod04g0293 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 225 | 235 | IPR000408 | - | |
| Dod04g0293 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 371 | 424 | IPR000408 | - | |
| Dod04g0293 | 477 | SUPERFAMILY | RCC1/BLIP-II | 18 | 475 | IPR009091 | - | |
| Dod04g0293 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 425 | 475 | IPR000408 | - | |
| Dod04g0293 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 357 | 367 | IPR000408 | - | |
| Dod04g0293 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 222 | 251 | - | - | |
| Dod04g0293 | 477 | Gene3D | - | 5 | 136 | IPR009091 | - | |
| Dod04g0293 | 477 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 12 | 477 | - | - | |
| Dod04g0293 | 477 | MobiDBLite | consensus disorder prediction | 138 | 204 | - | - | |
| Dod04g0293 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 411 | 421 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod04g0293 | Dod-Chr4 | 3640350 | 3645961 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod04g0293 | - | - | gmx:100778841 | 848.58 |