Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0260 ATGGAGTCACCTAAGGCGAGGAAATCAGGGTTGAATCTCCCAGCTGGGATGTCAGGGACATCACTGCGCCTCGACACCTTCGCAGCCTCATCTTCTTCATTCCGCGCCATATCGAACCTGACATCACCATCCAAGCCATCGTCATCATCTTCTCCTTCGACATGCAGTGACAGGTTCATACCGTGCAGGTCATCGTCGAGGTTGCACACCTTCGGGCTGATCGAGAAGCCGTCGCCGGTGAAAGAAGGGAGCAACGAGGCATACTCAAGGTTGTTGAAATCTGAGCTCTTCGGCTCTGACTTTGCTTCCCCTTCTTCTTCTCTTGCAGGTCCTGGTGCTTCTTCACCTGTCAACAGTCCCAGTAAGAATATGCTTCGGTTCAAGACTGATCACTCTGGACCTTCCTCCCCTTTCTCGCCTTCTGTCTTGGGACAACAGACTGGCTTCTCTTCTGAGTCTTGTACCCCTCCTAAGCCTCCCAGGAAAGTTCCCAAGACACCCCACAAGGTTCTGGATGCCCCATCACTTCAAGATGACTTTTACTTGAATCTTGTGGATTGGTCCTCACAGAATGTTCTTGCCGTGGGGCTAGGCACTTGTGTTTATCTATGGAGTGCTTCAAACAGCAAAGTTACTAAGCTATGTGACTTGGGGCCTTATGATGGTGTCTGCTCTGTCCAGTGGACCAGGGAGGGTTCTTATATATCCATTGGTACAAACCTTGGTCAAGTTCAGATTTGGGATGGAACCAAGTGTAAGAAGGTGAGAACAATGGGGGGCCATCAAACAAGAACCGGTGTCTTGGCGTGGAATTCTCGCATTTTGGCTTCTGGGAGCAGGGATAGGAACATACTTCAGCATGACATGAGGGTCTCAAGTGACTTTATTGGCAAGCTTGTTGGCCACAAATCTGAGGTTTGTGGGTTGAAATGGTCCTGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTCTTGGTATGGAATCAGCACTCTCAGCAACCTGCTTTGAGACTAACAGAGCACACAGCAGCTGTGAAAGCCATTGCCTGGTCACCTCACCAAAGCAGTCTCCTCGCGTCAGGAGGAGGAACTGCTGATAGGTGTATCCGCTTCTGGAACACCACAAATGGCCATCAATTGAACAGTGTTGACACTGGGAGCCAGGTTTGCAACCTTGCTTGGAGTAAAAATGTAAATGAGCTAGTAAGCACACATGGTTACTCCCAGAATCAGATTATGGTGTGGAAATATCCATCACTAGCAAAGGTTGCAACTCTAACAGGCCACAGCATGCGAGTGCTTTACCTTGCAATGTCTCCTGATGGTCAGACAATAGTAACTGGTGCAGGAGATGAGACACTGCGGTTTTGGAATATTTTCCCATCAATGAAAACACCTGCCCCCGTTAAAGATACAGGCCTTTGGTCACTTGGGCGCACCCAAATTCGATGA 1461 0.4901 MESPKARKSGLNLPAGMSGTSLRLDTFAASSSSFRAISNLTSPSKPSSSSSPSTCSDRFIPCRSSSRLHTFGLIEKPSPVKEGSNEAYSRLLKSELFGSDFASPSSSLAGPGASSPVNSPSKNMLRFKTDHSGPSSPFSPSVLGQQTGFSSESCTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSYISIGTNLGQVQIWDGTKCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTPAPVKDTGLWSLGRTQIR* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0260 486 PANTHER PROTEIN FIZZY-RELATED 3 9 486 - -
Dod04g0260 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 429 462 - -
Dod04g0260 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 429 462 IPR001680 GO:0005515
Dod04g0260 486 SUPERFAMILY WD40 repeat-like 162 462 IPR036322 GO:0005515
Dod04g0260 486 CDD WD40 202 461 - -
Dod04g0260 486 Pfam WD domain, G-beta repeat 340 376 IPR001680 GO:0005515
Dod04g0260 486 Pfam WD domain, G-beta repeat 296 331 IPR001680 GO:0005515
Dod04g0260 486 Pfam WD domain, G-beta repeat 426 461 IPR001680 GO:0005515
Dod04g0260 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 385 IPR001680 GO:0005515
Dod04g0260 486 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 486 IPR033010 GO:0010997|GO:0097027|GO:1904668
Dod04g0260 486 Gene3D - 122 463 IPR015943 GO:0005515
Dod04g0260 486 MobiDBLite consensus disorder prediction 106 154 - -
Dod04g0260 486 SMART WD40_4 292 331 IPR001680 GO:0005515
Dod04g0260 486 SMART WD40_4 164 205 IPR001680 GO:0005515
Dod04g0260 486 SMART WD40_4 379 419 IPR001680 GO:0005515
Dod04g0260 486 SMART WD40_4 208 248 IPR001680 GO:0005515
Dod04g0260 486 SMART WD40_4 251 288 IPR001680 GO:0005515
Dod04g0260 486 SMART WD40_4 422 461 IPR001680 GO:0005515
Dod04g0260 486 SMART WD40_4 334 376 IPR001680 GO:0005515
Dod04g0260 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 331 - -
Dod04g0260 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 340 IPR001680 GO:0005515
Dod04g0260 486 MobiDBLite consensus disorder prediction 38 57 - -
Dod04g0260 486 ProSitePatterns Trp-Asp (WD) repeats signature. 448 462 IPR019775 -
Dod04g0260 486 MobiDBLite consensus disorder prediction 106 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0260 Dod-Chr4 3170158 3174164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g0260 296 462 Miscellaneous Gene Families AT5G08390 21.429 4.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0260 K03364 - gmx:547741 849.736