Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g0241 ATGGGAGATCAAGTGGAGGAGAGGTTGGGATCGGAAGGATTGGAGTCCTCTCCCGCCGCCGCCGTCAAGCCCGACGAGCTATGCATGGAGATCGACCCGCCCCCGTTGCAGGAGAACGTCGCCACCGCCGAGGACTGGCGGAAAGCACTCAACAAGGTCGTACCTGCTGTCGTCGTCCTCCGCACCACCGCATGCCGCTCCTTTGACACCGAGTCCGCCGGTGCCAGCTACGCTACTGGCTTCATCGTTGACAAGCGCCGCGGCATCATCCTCACCAATCGCCACGTCGTCAAGCCTGGACCTGTCGTTGCGGAAGCCATGTTTCTGAACCGTGAAGAAGTTCCGGTGCATCCGATATATAGAGATCCAGTCCATGATTTTGGCTTCTTTCGATATGATCCTAGTGCTGTACAATTTCTGAACTATGAGGAGATACCTCTCGCACCTGAGGCTGCTTGTGTTGGACTAGAAATCAGAGTTGTTGGTAATGATAGTGGCGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGATAGGGATGCCCCTCACTATAAGAAGGATGGGTATAATGACTTCAATACCTTCTACATGCAAGCAGCATCTGGGACCAAAGGAGGATCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCAGTTGCCTTGAATGCTGGGAGCAAGTCATCAAGTGCATCAGCATTCTTTTTACCTCTTGAACGAGTTGTGCGGGCATTAAGGTTTCTTCAACAGGACAGTGAAACATATGTTGATAAATGGACCGCAGTTTCTATCCCTCGTGGTACACTTCAGGTGACATTTCTTCATAAAGGTTTTGATGAGACTCGTCGTCTTGGGCTAAGGAGCGAGACAGAGCAGATGGTACGTCATGCTTCTCCAGCTAGTGAAACTGGAATGCTAGTTGTGGACTCTGTGGTGCCAGGCGGTCCAGGTTATAAACATTTGGAACCGGGTGATGTACTTGTTCGTGTCAATGGGGAAGTCATTACTCAGTTTCTGAAACTCGAGACTATACTTGATGATAGTGTAAACAAGAATGTTGAATTACTAATTGAAAGGGGTGGCACATCGAAGATATTATCTTTGTTGGTGCAAGATTTGCACTCAATAACTCCTGATTATTTCTTAGAAGTTAGTGGGGCAGTGATACATCCTCTTTCTTATCAGCAGGCTAGAAACTTCCGTTTTCACTGTGGTCTTGTTTATGTTACTGAACCAGGATATATGCTCTTTAGAGCAGGTGTTCCCCGCCATGCAATAATTAAGAAATTTGCTGGAGAAGAAATATCTCGTGTAGAAGAACTGATATCAGTTCTCTCTAAACTGTCTAGAGGTGCTCGAGTCCCATTGGAGTATATAAGCTACATGGATCGTCATCGGAGGAAGTCTGTGTTAGTGACGGTTGACCGCCATGAGTGGTATACACCTCCCCAGATTTACACTCGGGATGACAGTACTGGCCTCTGGATTGCAAGGCCTGCTTTTCAGCCTGATTCCCCTTATCTATCGTCTGGTGTTAAAGATGTTGGAAATCTTGCCACCCAGCCAGTTTCACTTACCGGTGATCATGCTTGTGGGGGACATTTGTATGAAGATAACAATCGGGAGTTGGCTGATGGTGTCACTAGCATGGAAACCAATTGTGAAGATCCTTCTGCATATGCATCTCACCACAATGCATCTGATGTTGGGGTGAAAAAACGAAGAGTGGAGGAAGATTTATCTGCTGATGGAGGTGTTGCTAATTTTTCCATAAATGAAACTGGTGCAACAAAGCTTGGGAAATTAAATGTTGTTCAGGATGATGTGTTAATGGACTATCAAGGTGCAACTGCAGCAGCAGCAAATGCATCAGTTGCTGAGCGTGTCATCGAGCCTACTCTTGTGATGTTTGAGGTTCATGTTCCTCCATCTTGCATGCTTGATGGTGTTCATTCACAGCATTTTTTTGGAACTGGTGTCATAATATATCACTCTAAAGATATGGGATTAGTTGCAGTTGACAAGAATACAGTTGCAATATCTGCGTCTGATGTGATGCTATCGTTTGCTGCTTTCCCGGTTGAAATTCCAGGAGAGGTGGTGTTTCTCCACCCTGTTCACAATTATGCTCTCATATCATATGATCCCTCTGCTTTGGGACCTGTTGGTGCTTCAGTTGTTTGTGCTGCAGAGTTACTTCCAGAGCCGGCATTACGTCGAGGGGATTCTGTTTACCTTGTGGGGTTGAGTAGAAGCCTTCAAGCAACTTCCAGGAAATCTGTTGTCACCAATCCCTGTGCTGCATTAAATATAGGATCTGCTGATTCCCCACGTTACAGAGCAACTAATATGGAAGTAATTGAGCTTGATACTGATTTTGGTAGTACATTTTCGGGCGTGCTAACAGATGAACAAGGAAGGGTCCAAGCTATATGGGGAAGCTTCTCTACTCAGCTGAAATTTGGTTGCAGTACATCAGAAGATCATCAATTTGTGAGGGGTTTACCGATTTATGCAATAAGTCAGGTCCTTGAAAAGATTGTATCTGGTGCAAATGGGCCACCTCTTCTGATAAATGGTGTCAAACGGCCTATGCCCCTTGTGAGAATTTTAGAGGTTGAACTTTATCCAACATTGCTTTCTAAGGCTCGGAGTTTTGGATTGAGCGATGATTGGATTCAGGCACTTGTCAAGAAAGACCCAGTAAGGCGACAGGTTTTACGTGTTAAAGGTTGTTTGGCGGGATCTAAGGCTGAGAATCTTTTAGAGCAAGGAGACATGGTTTTAGCTATTAATAAAGAACCAGTAACATGCTTCCGCGACATTGAAATTGCATGCCAAGCTTTAGACAAATCTCAGGCCAATGATGGGAAGCTTTGTATGACTATTTTTCGACAGGGACAGGAGGTTGAGCTTCTTGTGGGAACAGATGTTAGGGATGGAAATGGCACAACACGGGCAATTAATTGGTGTGGCTGTATTGTTCAGGATCCACACCCAGCAGTACGTGCTCTTGGATTTCTTCCTGAAGAAGGTCATGGTGTATACGTGGCAAGGTGGTGTCATGGTAGTCCTGTACATAGATATGGTCTATATGCTCTGCAGTGGATAGTTGAAATTAATGGAAAACCAACTCCAAATTTAGATTCTTTCGTTGATGTGACAAAGGAACTGGAGCATGGAGAATTTGTTCGTGTGAGGACAATTCACCTCAATGGGAAGCCGCGAGTCCTAACATTGAAGCAAGATTTGCATTATTGGCCTACCTGGGAATTAAGATTCAATCCAGACTCTGCAATTTGGCATCGTAATATGGTCAAGGCATTGAAGTGCAATACCGTATGA 3351 0.4542 MGDQVEERLGSEGLESSPAAAVKPDELCMEIDPPPLQENVATAEDWRKALNKVVPAVVVLRTTACRSFDTESAGASYATGFIVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPSAVQFLNYEEIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQQDSETYVDKWTAVSIPRGTLQVTFLHKGFDETRRLGLRSETEQMVRHASPASETGMLVVDSVVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETILDDSVNKNVELLIERGGTSKILSLLVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFHCGLVYVTEPGYMLFRAGVPRHAIIKKFAGEEISRVEELISVLSKLSRGARVPLEYISYMDRHRRKSVLVTVDRHEWYTPPQIYTRDDSTGLWIARPAFQPDSPYLSSGVKDVGNLATQPVSLTGDHACGGHLYEDNNRELADGVTSMETNCEDPSAYASHHNASDVGVKKRRVEEDLSADGGVANFSINETGATKLGKLNVVQDDVLMDYQGATAAAANASVAERVIEPTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSKDMGLVAVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGASVVCAAELLPEPALRRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLTDEQGRVQAIWGSFSTQLKFGCSTSEDHQFVRGLPIYAISQVLEKIVSGANGPPLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIEIACQALDKSQANDGKLCMTIFRQGQEVELLVGTDVRDGNGTTRAINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNLDSFVDVTKELEHGEFVRVRTIHLNGKPRVLTLKQDLHYWPTWELRFNPDSAIWHRNMVKALKCNTV* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g0241 1116 SUPERFAMILY PDZ domain-like 308 407 IPR036034 GO:0005515
Dod04g0241 1116 Pfam PDZ-like domain 377 450 IPR025926 -
Dod04g0241 1116 Pfam PDZ-like domain 986 1062 IPR025926 -
Dod04g0241 1116 Gene3D - 150 262 IPR043504 -
Dod04g0241 1116 CDD PDZ_metalloprotease 309 370 - -
Dod04g0241 1116 SUPERFAMILY Trypsin-like serine proteases 44 248 IPR009003 -
Dod04g0241 1116 Gene3D - 908 982 IPR036034 GO:0005515
Dod04g0241 1116 SMART pdz_new 884 969 IPR001478 GO:0005515
Dod04g0241 1116 SMART pdz_new 1005 1074 IPR001478 GO:0005515
Dod04g0241 1116 SMART pdz_new 284 363 IPR001478 GO:0005515
Dod04g0241 1116 Pfam Trypsin-like peptidase domain 78 224 - -
Dod04g0241 1116 PRINTS HtrA/DegQ protease family signature 195 212 IPR001940 GO:0004252|GO:0006508
Dod04g0241 1116 PRINTS HtrA/DegQ protease family signature 322 334 IPR001940 GO:0004252|GO:0006508
Dod04g0241 1116 PRINTS HtrA/DegQ protease family signature 88 100 IPR001940 GO:0004252|GO:0006508
Dod04g0241 1116 PRINTS HtrA/DegQ protease family signature 154 178 IPR001940 GO:0004252|GO:0006508
Dod04g0241 1116 PRINTS HtrA/DegQ protease family signature 217 234 IPR001940 GO:0004252|GO:0006508
Dod04g0241 1116 PANTHER PROTEASE DO-LIKE 7 25 1111 - -
Dod04g0241 1116 Gene3D - 284 375 IPR036034 GO:0005515
Dod04g0241 1116 SUPERFAMILY PDZ domain-like 910 1012 IPR036034 GO:0005515
Dod04g0241 1116 Gene3D - 989 1087 IPR036034 GO:0005515
Dod04g0241 1116 SUPERFAMILY PDZ domain-like 1014 1094 IPR036034 GO:0005515
Dod04g0241 1116 Gene3D - 32 144 IPR043504 -
Dod04g0241 1116 SUPERFAMILY Trypsin-like serine proteases 635 824 IPR009003 -
Dod04g0241 1116 ProSiteProfiles PDZ domain profile. 273 374 IPR001478 GO:0005515
Dod04g0241 1116 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 25 1111 - -
Dod04g0241 1116 Pfam PDZ domain 309 361 IPR041489 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g0241 Dod-Chr4 2972970 2997892 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g0241 K22686 - gmx:100777219 2026.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0241 04 2972970 2997892 Dod04g0241 04 2972970 2997892 ECH